rrRoadRunnerOptions.h

/*
 * rrRoadRunnerOptions.h
 *
 *  Created on: Sep 9, 2013
 *      Author: andy
 */

#ifndef RRROADRUNNEROPTIONS_H_
#define RRROADRUNNEROPTIONS_H_

#include "rrExporter.h"
#include <string>
#include <vector>

#if defined(_MSC_VER)
#include "msc_stdint.h"
#else
#include <stdint.h>
#endif

namespace rr
{

struct RR_DECLSPEC LoadSBMLOptions
{
    enum ModelGeneratorOpt
    {
        CONSERVED_MOIETIES               = (0x1 << 0),  // => 0x00000001

        RECOMPILE                        = (0x1 << 1),  // => 0x00000010

        READ_ONLY                        = (0x1 << 2),  // => 0x00000100

        MUTABLE_INITIAL_CONDITIONS       = (0x1 << 3),   // => 0x00001000

        OPTIMIZE_GVN                     = (0x1 << 4),

        OPTIMIZE_CFG_SIMPLIFICATION      = (0x1 << 5),

        OPTIMIZE_INSTRUCTION_COMBINING   = (0x1 << 6),

        OPTIMIZE_DEAD_INST_ELIMINATION   = (0x1 << 7),

        OPTIMIZE_DEAD_CODE_ELIMINATION   = (0x1 << 8),

        OPTIMIZE_INSTRUCTION_SIMPLIFIER  = (0x1 << 9)
    };

    enum LoadOpt
    {
        NO_DEFAULT_SELECTIONS           = (0x1 << 0)   // => 0x00000001
    };

    LoadSBMLOptions();

    uint16_t version;

    uint16_t size;


    uint32_t modelGeneratorOpt;

    uint32_t loadFlags;
};

struct RR_DECLSPEC SimulateOptions
{
    enum Options
    {
        RESET_MODEL             = (0x1 << 0), // => 0x00000001

        STRUCTURED_RESULT       = (0x1 << 1)  // => 0x00000010
    };

    enum Integrator
    {
        CVODE
    };

    enum IntegratorFlags
    {
        STIFF = (0x1 << 0), // => 0x00000001
    };

    SimulateOptions();

    SimulateOptions(const std::string& sbmlSettingFilePath);

    uint32_t flags;

    Integrator integrator;

    uint32_t integratorFlags;

    int steps;

    double start;

    double duration;

    double absolute;

    double relative;

    std::vector<std::string> variables;

    std::vector<std::string> amounts;

    std::vector<std::string> concentrations;

    static const double MIN_RELATIVE;

    static const double MIN_ABSOLUTE;
};


} /* namespace rr */
#endif /* RRROADRUNNEROPTIONS_H_ */