rr::LoadSBMLOptions Struct Reference

#include <rrRoadRunnerOptions.h>

Public Types
enum	ModelGeneratorOpt {   CONSERVED_MOIETIES = (0x1 << 0), RECOMPILE = (0x1 << 1), READ_ONLY = (0x1 << 2), MUTABLE_INITIAL_CONDITIONS = (0x1 << 3),   OPTIMIZE_GVN = (0x1 << 4), OPTIMIZE_CFG_SIMPLIFICATION = (0x1 << 5), OPTIMIZE_INSTRUCTION_COMBINING = (0x1 << 6), OPTIMIZE_DEAD_INST_ELIMINATION = (0x1 << 7),   OPTIMIZE_DEAD_CODE_ELIMINATION = (0x1 << 8), OPTIMIZE_INSTRUCTION_SIMPLIFIER = (0x1 << 9) }
enum	LoadOpt { NO_DEFAULT_SELECTIONS = (0x1 << 0) }

Public Member Functions
	LoadSBMLOptions ()

Public Attributes
uint16_t	version
uint16_t	size

Detailed Description

Options for loading SBML into RoadRunner.

Future version may add additional fields to the end of this struct, this way we can maintain binary compatibility with older RoadRunner versions.

Member Enumeration Documentation

enum rr::LoadSBMLOptions::LoadOpt

Enumerator
NO_DEFAULT_SELECTIONS	Do not create a default selection list when the model is loaded.

enum rr::LoadSBMLOptions::ModelGeneratorOpt

Enumerator
CONSERVED_MOIETIES	perform conservation analysis. This causes a re-ordering of the species, so results generated with this flag enabled can not be compared index wise to results generated otherwise. currently only implemented with the C code generating model
RECOMPILE	Should the model be recompiled? The LLVM ModelGenerator maintins a hash table of currently running models. If this flag is NOT set, then the generator will look to see if there is already a running instance of the given model and use the generated code from that one. If only a single instance of a model is run, there is no need to cache the models, and this can safetly be enabled, realizing some performance gains.
READ_ONLY	If this is set, then a read-only model is generated. A read-only model can be simulated, but no code is generated to set model values, i.e. parameters, amounts, values, etc... It takes a finite amount of time to generate the model value setting functions, and if they are not needed, one may see some performance gains, especially in very large models.
MUTABLE_INITIAL_CONDITIONS	Generate accessor functions to allow changing of initial conditions.
OPTIMIZE_GVN	GVN - This pass performs global value numbering and redundant load elimination cotemporaneously.
OPTIMIZE_CFG_SIMPLIFICATION	CFGSimplification - Merge basic blocks, eliminate unreachable blocks, simplify terminator instructions, etc...
OPTIMIZE_INSTRUCTION_COMBINING	InstructionCombining - Combine instructions to form fewer, simple instructions. This pass does not modify the CFG, and has a tendency to make instructions dead, so a subsequent DCE pass is useful.
OPTIMIZE_DEAD_INST_ELIMINATION	DeadInstElimination - This pass quickly removes trivially dead instructions without modifying the CFG of the function. It is a BasicBlockPass, so it runs efficiently when queued next to other BasicBlockPass's.
OPTIMIZE_DEAD_CODE_ELIMINATION	DeadCodeElimination - This pass is more powerful than DeadInstElimination, because it is worklist driven that can potentially revisit instructions when their other instructions become dead, to eliminate chains of dead computations.
OPTIMIZE_INSTRUCTION_SIMPLIFIER	InstructionSimplifier - Remove redundant instructions.

Constructor & Destructor Documentation

rr::LoadSBMLOptions::LoadSBMLOptions

(

)

initializes the struct with the default options.

Member Data Documentation

uint16_t rr::LoadSBMLOptions::size

sizeof this struct

uint16_t rr::LoadSBMLOptions::version

the version this struct

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The documentation for this struct was generated from the following files:

• rrRoadRunnerOptions.h
• rrRoadRunnerOptions.cpp