copasi API

The copasi API library wraps copasi to improve usability of the copasi library. It provides some convient functions to initialize and run simulations.

Tutorial

• copasi_api v0.1 Tutorial - explains how to use copasi API

Source Code Management

• Source Code - development repository

Documentation

• copasi API (generated by Doxygen)

Download

• Developer Notes copasi api v0.1 for more

Issues

• Check the issues tracker for bug reports and features planned

Developers

• Michal Galdzicki (mgaldzic) University of Washington
• Deepak Chandran (dchandran) University of Washington

Contact

• Michal Galdzicki

Libraries Used

• LAPACK - implementation of routines for solving systems of simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems.
• muParser - a fast math parser library
• cURL - client-side URL transfer library needed by raptor
• Raptor RDF Syntax Library - a set of parsers and serializers that generate Resource Description Framework (RDF) triples
• libSBML - read, write, manipulate, translate, and validate SBML
• Antimony - A modular human-readable, human-writeable model definition language
• libstructural - network structural analysis based on stoichiometry matrix
• COPASI - simulation and analysis of biochemical networks and their dynamics

Acknowledgements

• We would like to especially thank. <<cite funding="" and="" other="" help="" here>="">>