File List

Here is a list of all files with brief descriptions:

copasi/blas.h [code]
copasi/blaswrap.h [code]
copasi/clapackwrap.h [code]
copasi/copasi.h [code]
copasi/copasi_api.cpp
copasi/copasi_api.h [code]
copasi/copasiversion.h [code]
copasi/FlexLexer.h [code]
copasi/lapack.h [code]
copasi/mathematics.h [code]
copasi/objective_functions.h [code]
copasi/test_copasi.c
copasi/barChart/qwt3dBars.cpp
copasi/barChart/qwt3dBars.h [code]
copasi/barChart/qwt3dBaseWidget.cpp
copasi/barChart/qwt3dBaseWidget.h [code]
copasi/barChart/qwt3dColor.cpp
copasi/barChart/qwt3dColor.h [code]
copasi/barChart/qwt3dPlot.cpp
copasi/barChart/qwt3dPlot.h [code]
copasi/barChart/qwt3dScale.cpp
copasi/barChart/qwt3dScale.h [code]
copasi/commandline/CConfigurationFile.cpp
copasi/commandline/CConfigurationFile.h [code]
copasi/commandline/COptionParser.cpp
copasi/commandline/COptionParser.h [code]
copasi/commandline/COptions.cpp
copasi/commandline/COptions.h [code]
copasi/compareExpressions/CEvaluationNodeNormalizer.cpp
copasi/compareExpressions/CEvaluationNodeNormalizer.h [code]
copasi/compareExpressions/CNormalBase.cpp
copasi/compareExpressions/CNormalBase.h [code]
copasi/compareExpressions/CNormalCall.cpp
copasi/compareExpressions/CNormalCall.h [code]
copasi/compareExpressions/CNormalChoice.cpp
copasi/compareExpressions/CNormalChoice.h [code]
copasi/compareExpressions/CNormalChoiceLogical.cpp
copasi/compareExpressions/CNormalChoiceLogical.h [code]
copasi/compareExpressions/CNormalFraction.cpp
copasi/compareExpressions/CNormalFraction.h [code]
copasi/compareExpressions/CNormalFunction.cpp
copasi/compareExpressions/CNormalFunction.h [code]
copasi/compareExpressions/CNormalGeneralPower.cpp
copasi/compareExpressions/CNormalGeneralPower.h [code]
copasi/compareExpressions/CNormalItem.cpp
copasi/compareExpressions/CNormalItem.h [code]
copasi/compareExpressions/CNormalItemPower.cpp
copasi/compareExpressions/CNormalItemPower.h [code]
copasi/compareExpressions/CNormalLcm.cpp
copasi/compareExpressions/CNormalLcm.h [code]
copasi/compareExpressions/CNormalLogical.cpp
copasi/compareExpressions/CNormalLogical.h [code]
copasi/compareExpressions/CNormalLogicalItem.cpp
copasi/compareExpressions/CNormalLogicalItem.h [code]
copasi/compareExpressions/CNormalProduct.cpp
copasi/compareExpressions/CNormalProduct.h [code]
copasi/compareExpressions/CNormalSum.cpp
copasi/compareExpressions/CNormalSum.h [code]
copasi/compareExpressions/CNormalTranslation.cpp
copasi/compareExpressions/CNormalTranslation.h [code]
copasi/compareExpressions/compare_utilities.cpp
copasi/compareExpressions/compare_utilities.h [code]
copasi/compareExpressions/ConvertToCEvaluationNode.cpp
copasi/compareExpressions/ConvertToCEvaluationNode.h [code]
copasi/CopasiDataModel/CCopasiDataModel.cpp
copasi/CopasiDataModel/CCopasiDataModel.h [code]
copasi/CopasiSE/CopasiSE.cpp
copasi/CopasiUI/main.cpp
copasi/CopasiUI/resource.h [code]
copasi/crosssection/CCrossSectionMethod.cpp
copasi/crosssection/CCrossSectionMethod.h [code]
copasi/crosssection/CCrossSectionProblem.cpp
copasi/crosssection/CCrossSectionProblem.h [code]
copasi/crosssection/CCrossSectionTask.cpp
copasi/crosssection/CCrossSectionTask.h [code]
copasi/elementaryFluxModes/CBitPatternMethod.cpp
copasi/elementaryFluxModes/CBitPatternMethod.h [code]
copasi/elementaryFluxModes/CBitPatternTree.cpp
copasi/elementaryFluxModes/CBitPatternTree.h [code]
copasi/elementaryFluxModes/CBitPatternTreeMethod.cpp
copasi/elementaryFluxModes/CBitPatternTreeMethod.h [code]
copasi/elementaryFluxModes/CBitPatternTreeNode.cpp
copasi/elementaryFluxModes/CBitPatternTreeNode.h [code]
copasi/elementaryFluxModes/CEFMAlgorithm.cpp
copasi/elementaryFluxModes/CEFMAlgorithm.h [code]
copasi/elementaryFluxModes/CEFMMethod.cpp
copasi/elementaryFluxModes/CEFMMethod.h [code]
copasi/elementaryFluxModes/CEFMProblem.cpp
copasi/elementaryFluxModes/CEFMProblem.h [code]
copasi/elementaryFluxModes/CEFMTask.cpp
copasi/elementaryFluxModes/CEFMTask.h [code]
copasi/elementaryFluxModes/CFluxMode.cpp
copasi/elementaryFluxModes/CFluxMode.h [code]
copasi/elementaryFluxModes/CFluxScore.cpp
copasi/elementaryFluxModes/CFluxScore.h [code]
copasi/elementaryFluxModes/CStepMatrix.cpp
copasi/elementaryFluxModes/CStepMatrix.h [code]
copasi/elementaryFluxModes/CStepMatrixColumn.cpp
copasi/elementaryFluxModes/CStepMatrixColumn.h [code]
copasi/elementaryFluxModes/CTableauLine.cpp
copasi/elementaryFluxModes/CTableauLine.h [code]
copasi/elementaryFluxModes/CTableauMatrix.cpp
copasi/elementaryFluxModes/CTableauMatrix.h [code]
copasi/elementaryFluxModes/CZeroSet.cpp
copasi/elementaryFluxModes/CZeroSet.h [code]
copasi/function/CCallParameters.cpp
copasi/function/CCallParameters.h [code]
copasi/function/CDerive.cpp
copasi/function/CDerive.h [code]
copasi/function/CEvaluationLexer.h [code]
copasi/function/CEvaluationLexer_lex.cpp
copasi/function/CEvaluationNode.cpp
copasi/function/CEvaluationNode.h [code]
copasi/function/CEvaluationNodeCall.cpp
copasi/function/CEvaluationNodeCall.h [code]
copasi/function/CEvaluationNodeChoice.cpp
copasi/function/CEvaluationNodeChoice.h [code]
copasi/function/CEvaluationNodeConstant.cpp
copasi/function/CEvaluationNodeConstant.h [code]
copasi/function/CEvaluationNodeDelay.cpp
copasi/function/CEvaluationNodeDelay.h [code]
copasi/function/CEvaluationNodeFunction.cpp
copasi/function/CEvaluationNodeFunction.h [code]
copasi/function/CEvaluationNodeLogical.cpp
copasi/function/CEvaluationNodeLogical.h [code]
copasi/function/CEvaluationNodeNumber.cpp
copasi/function/CEvaluationNodeNumber.h [code]
copasi/function/CEvaluationNodeObject.cpp
copasi/function/CEvaluationNodeObject.h [code]
copasi/function/CEvaluationNodeOperator.cpp
copasi/function/CEvaluationNodeOperator.h [code]
copasi/function/CEvaluationNodeStructure.cpp
copasi/function/CEvaluationNodeStructure.h [code]
copasi/function/CEvaluationNodeVariable.cpp
copasi/function/CEvaluationNodeVariable.h [code]
copasi/function/CEvaluationNodeVector.cpp
copasi/function/CEvaluationNodeVector.h [code]
copasi/function/CEvaluationNodeWhiteSpace.cpp
copasi/function/CEvaluationNodeWhiteSpace.h [code]
copasi/function/CEvaluationParser_yacc.cpp
copasi/function/CEvaluationParser_yacc.h [code]
copasi/function/CEvaluationTree.cpp
copasi/function/CEvaluationTree.h [code]
copasi/function/CExpression.cpp	Implementation file of class CExpression
copasi/function/CExpression.h [code]	Header file of class CExpression
copasi/function/CFunction.cpp
copasi/function/CFunction.h [code]
copasi/function/CFunctionAnalyzer.cpp
copasi/function/CFunctionAnalyzer.h [code]
copasi/function/CFunctionDB.cpp
copasi/function/CFunctionDB.h [code]
copasi/function/CFunctionParameter.cpp
copasi/function/CFunctionParameter.h [code]
copasi/function/CFunctionParameters.cpp
copasi/function/CFunctionParameters.h [code]
copasi/function/CKinFunction.cpp
copasi/function/CKinFunction.h [code]
copasi/function/CMassAction.cpp
copasi/function/CMassAction.h [code]
copasi/function/CNodeK.cpp
copasi/function/CNodeK.h [code]
copasi/function/FunctionDB.xml.h [code]
copasi/layout/CLayout.cpp
copasi/layout/CLayout.h [code]
copasi/layout/CLayoutInitializer.cpp
copasi/layout/CLayoutInitializer.h [code]
copasi/layout/CLBase.cpp
copasi/layout/CLBase.h [code]
copasi/layout/CLCurve.cpp
copasi/layout/CLCurve.h [code]
copasi/layout/CLGlyphs.cpp
copasi/layout/CLGlyphs.h [code]
copasi/layout/CLGraphicalObject.cpp
copasi/layout/CLGraphicalObject.h [code]
copasi/layout/CListOfLayouts.cpp
copasi/layout/CListOfLayouts.h [code]
copasi/layout/CLReactionGlyph.cpp
copasi/layout/CLReactionGlyph.h [code]
copasi/layout/SBMLDocumentLoader.cpp
copasi/layout/SBMLDocumentLoader.h [code]
copasi/layoutUI/BezierCurve.cpp	Implementation file of class BezierCurve
copasi/layoutUI/BezierCurve.h [code]	Header file of class BezierCurve
copasi/layoutUI/CArrow.cpp	Implementation file of class CArrow
copasi/layoutUI/CArrow.h [code]	Header file of class CArrow
copasi/layoutUI/CCompartmentGraphNode.cpp
copasi/layoutUI/CCompartmentGraphNode.h [code]
copasi/layoutUI/CDataEntity.cpp
copasi/layoutUI/CDataEntity.h [code]
copasi/layoutUI/CGraphCurve.cpp
copasi/layoutUI/CGraphCurve.h [code]
copasi/layoutUI/CGraphNode.cpp
copasi/layoutUI/CGraphNode.h [code]
copasi/layoutUI/CLabel.cpp
copasi/layoutUI/CLabel.h [code]
copasi/layoutUI/CQCurrentValueTable.cpp
copasi/layoutUI/CQCurrentValueTable.h [code]
copasi/layoutUI/CQGLNetworkPainter.cpp
copasi/layoutUI/CQGLNetworkPainter.h [code]
copasi/layoutUI/CQGLViewport.cpp
copasi/layoutUI/CQGLViewport.h [code]
copasi/layoutUI/CQLayoutMainWindow.cpp
copasi/layoutUI/CQLayoutMainWindow.h [code]
copasi/layoutUI/CQPlayerControlWidget.cpp
copasi/layoutUI/CQPlayerControlWidget.h [code]
copasi/layoutUI/CSimSummaryInfo.cpp
copasi/layoutUI/CSimSummaryInfo.h [code]
copasi/layoutUI/CVisParameters.cpp
copasi/layoutUI/CVisParameters.h [code]
copasi/layoutUI/FontChooser.cpp
copasi/layoutUI/FontChooser.h [code]
copasi/layoutUI/NodeSizePanel.cpp
copasi/layoutUI/NodeSizePanel.h [code]
copasi/layoutUI/ParaPanel.cpp
copasi/layoutUI/ParaPanel.h [code]
copasi/layoutUI/RGTextureSpec.cpp
copasi/layoutUI/RGTextureSpec.h [code]
copasi/lyap/CLyapMethod.cpp
copasi/lyap/CLyapMethod.h [code]
copasi/lyap/CLyapProblem.cpp
copasi/lyap/CLyapProblem.h [code]
copasi/lyap/CLyapTask.cpp
copasi/lyap/CLyapTask.h [code]
copasi/lyap/CLyapWolfMethod.cpp
copasi/lyap/CLyapWolfMethod.h [code]
copasi/MIRIAM/CBiologicalDescription.cpp
copasi/MIRIAM/CBiologicalDescription.h [code]
copasi/MIRIAM/CConstants.cpp
copasi/MIRIAM/CConstants.h [code]
copasi/MIRIAM/CCreator.cpp
copasi/MIRIAM/CCreator.h [code]
copasi/MIRIAM/CMIRIAMResource.cpp
copasi/MIRIAM/CMIRIAMResource.h [code]
copasi/MIRIAM/CModelMIRIAMInfo.cpp
copasi/MIRIAM/CModelMIRIAMInfo.h [code]
copasi/MIRIAM/CModified.cpp
copasi/MIRIAM/CModified.h [code]
copasi/MIRIAM/CRaptorInit.cpp
copasi/MIRIAM/CRaptorInit.h [code]
copasi/MIRIAM/CRDFGraph.cpp
copasi/MIRIAM/CRDFGraph.h [code]
copasi/MIRIAM/CRDFGraphConverter.cpp
copasi/MIRIAM/CRDFGraphConverter.h [code]
copasi/MIRIAM/CRDFLiteral.cpp
copasi/MIRIAM/CRDFLiteral.h [code]
copasi/MIRIAM/CRDFNode.cpp
copasi/MIRIAM/CRDFNode.h [code]
copasi/MIRIAM/CRDFObject.cpp
copasi/MIRIAM/CRDFObject.h [code]
copasi/MIRIAM/CRDFParser.cpp
copasi/MIRIAM/CRDFParser.h [code]
copasi/MIRIAM/CRDFPredicate.cpp
copasi/MIRIAM/CRDFPredicate.h [code]
copasi/MIRIAM/CRDFSubject.cpp
copasi/MIRIAM/CRDFSubject.h [code]
copasi/MIRIAM/CRDFTriplet.cpp
copasi/MIRIAM/CRDFTriplet.h [code]
copasi/MIRIAM/CRDFUtilities.cpp
copasi/MIRIAM/CRDFUtilities.h [code]
copasi/MIRIAM/CRDFWriter.cpp
copasi/MIRIAM/CRDFWriter.h [code]
copasi/MIRIAM/CReference.cpp
copasi/MIRIAM/CReference.h [code]
copasi/MIRIAM/WebServicesIssues/soapC.cpp
copasi/MIRIAM/WebServicesIssues/soapH.h [code]
copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.cpp
copasi/MIRIAM/WebServicesIssues/soapMiriamWebServicesSoapBindingProxy.h [code]
copasi/MIRIAM/WebServicesIssues/soapStub.h [code]
copasi/MIRIAM/WebServicesIssues/stdsoap2.cpp
copasi/MIRIAM/WebServicesIssues/stdsoap2.h [code]
copasi/MIRIAMUI/CQBiologicalDescriptionDM.cpp
copasi/MIRIAMUI/CQBiologicalDescriptionDM.h [code]
copasi/MIRIAMUI/CQCreatorDM.cpp
copasi/MIRIAMUI/CQCreatorDM.h [code]
copasi/MIRIAMUI/CQMiriamWidget.cpp
copasi/MIRIAMUI/CQMiriamWidget.h [code]
copasi/MIRIAMUI/CQModifiedDM.cpp
copasi/MIRIAMUI/CQModifiedDM.h [code]
copasi/MIRIAMUI/CQRDFTreeView.cpp
copasi/MIRIAMUI/CQRDFTreeView.h [code]
copasi/MIRIAMUI/CQRDFTreeViewItem.cpp
copasi/MIRIAMUI/CQRDFTreeViewItem.h [code]
copasi/MIRIAMUI/CQReferenceDM.cpp
copasi/MIRIAMUI/CQReferenceDM.h [code]
copasi/model/CAnnotation.cpp
copasi/model/CAnnotation.h [code]
copasi/model/CChemEq.cpp
copasi/model/CChemEq.h [code]
copasi/model/CChemEqElement.cpp
copasi/model/CChemEqElement.h [code]
copasi/model/CChemEqInterface.cpp
copasi/model/CChemEqInterface.h [code]
copasi/model/CChemEqParser.cpp
copasi/model/CChemEqParser.h [code]
copasi/model/CChemEqParser_lex.cpp
copasi/model/CChemEqParser_yacc.cpp
copasi/model/CChemEqParser_yacc.h [code]
copasi/model/CCompartment.cpp
copasi/model/CCompartment.h [code]
copasi/model/CDotOutput.cpp
copasi/model/CDotOutput.h [code]
copasi/model/CEvent.cpp
copasi/model/CEvent.h [code]	Header file of class CEvent
copasi/model/CMathEvent.cpp
copasi/model/CMathEvent.h [code]
copasi/model/CMathModel.cpp
copasi/model/CMathModel.h [code]
copasi/model/CMathTrigger.cpp
copasi/model/CMathTrigger.h [code]
copasi/model/CMetab.cpp
copasi/model/CMetab.h [code]
copasi/model/CMetabNameInterface.cpp
copasi/model/CMetabNameInterface.h [code]
copasi/model/CMMLOutput.cpp
copasi/model/CMMLOutput.h [code]
copasi/model/CModel.cpp
copasi/model/CModel.h [code]
copasi/model/CModelAnalyzer.cpp
copasi/model/CModelAnalyzer.h [code]
copasi/model/CModelExpansion.cpp
copasi/model/CModelExpansion.h [code]
copasi/model/CModelMerging.cpp
copasi/model/CModelMerging.h [code]
copasi/model/CModelValue.cpp	Implementation file of class CModelEntity and CModelValue
copasi/model/CModelValue.h [code]	Header file of class CModelEntity and CModelValue
copasi/model/CMoiety.cpp
copasi/model/CMoiety.h [code]
copasi/model/CObjectLists.cpp
copasi/model/CObjectLists.h [code]
copasi/model/CProcessQueue.cpp
copasi/model/CProcessQueue.h [code]
copasi/model/CReaction.cpp
copasi/model/CReaction.h [code]
copasi/model/CReactionInterface.cpp
copasi/model/CReactionInterface.h [code]
copasi/model/CState.cpp
copasi/model/CState.h [code]
copasi/moieties/CMoietiesMethod.cpp
copasi/moieties/CMoietiesMethod.h [code]
copasi/moieties/CMoietiesProblem.cpp
copasi/moieties/CMoietiesProblem.h [code]
copasi/moieties/CMoietiesTask.cpp
copasi/moieties/CMoietiesTask.h [code]
copasi/odepack++/CInternalSolver.h [code]
copasi/odepack++/CLSODA.cpp
copasi/odepack++/CLSODA.h [code]
copasi/odepack++/CLSODAR.cpp
copasi/odepack++/CLSODAR.h [code]
copasi/odepack++/common.cpp
copasi/odepack++/common.h [code]
copasi/odepack++/Cxerrwd.cpp
copasi/odepack++/Cxerrwd.h [code]
copasi/odepack++/dbnorm.cpp
copasi/odepack++/dbnorm.h [code]
copasi/odepack++/dcfode.cpp
copasi/odepack++/dcfode.h [code]
copasi/odepack++/dewset.cpp
copasi/odepack++/dewset.h [code]
copasi/odepack++/dfnorm.cpp
copasi/odepack++/dfnorm.h [code]
copasi/odepack++/dgbfa.h [code]
copasi/odepack++/dgbsl.h [code]
copasi/odepack++/dgefa.h [code]
copasi/odepack++/dgesl.h [code]
copasi/odepack++/dintdy.cpp
copasi/odepack++/dmnorm.cpp
copasi/odepack++/dmnorm.h [code]
copasi/odepack++/dprja.cpp
copasi/odepack++/drcheck.cpp
copasi/odepack++/dsolsy.cpp
copasi/odepack++/dstoda.cpp
copasi/optimization/COptItem.cpp
copasi/optimization/COptItem.h [code]
copasi/optimization/COptMethod.cpp
copasi/optimization/COptMethod.h [code]
copasi/optimization/COptMethodEP.cpp
copasi/optimization/COptMethodEP.h [code]
copasi/optimization/COptMethodGA.cpp
copasi/optimization/COptMethodGA.h [code]
copasi/optimization/COptMethodGASR.cpp
copasi/optimization/COptMethodGASR.h [code]
copasi/optimization/COptMethodHookeJeeves.cpp
copasi/optimization/COptMethodHookeJeeves.h [code]
copasi/optimization/COptMethodLevenbergMarquardt.cpp
copasi/optimization/COptMethodLevenbergMarquardt.h [code]
copasi/optimization/COptMethodNelderMead.cpp
copasi/optimization/COptMethodNelderMead.h [code]
copasi/optimization/COptMethodPraxis.cpp
copasi/optimization/COptMethodPraxis.h [code]
copasi/optimization/COptMethodPS.cpp
copasi/optimization/COptMethodPS.h [code]
copasi/optimization/COptMethodSA.cpp
copasi/optimization/COptMethodSA.h [code]
copasi/optimization/COptMethodSRES.cpp
copasi/optimization/COptMethodSRES.h [code]
copasi/optimization/COptMethodStatistics.cpp
copasi/optimization/COptMethodStatistics.h [code]
copasi/optimization/COptMethodSteepestDescent.cpp
copasi/optimization/COptMethodSteepestDescent.h [code]
copasi/optimization/COptMethodTruncatedNewton.cpp
copasi/optimization/COptMethodTruncatedNewton.h [code]
copasi/optimization/COptProblem.cpp
copasi/optimization/COptProblem.h [code]
copasi/optimization/COptTask.cpp
copasi/optimization/COptTask.h [code]
copasi/optimization/CPraxis.cpp
copasi/optimization/CPraxis.h [code]
copasi/optimization/CRandomSearch.cpp
copasi/optimization/CRandomSearch.h [code]
copasi/optimization/CTruncatedNewton.cpp
copasi/optimization/CTruncatedNewton.h [code]
copasi/optimization/FminBrent.cpp
copasi/optimization/FminBrent.h [code]
copasi/parameterFitting/CExperiment.cpp
copasi/parameterFitting/CExperiment.h [code]
copasi/parameterFitting/CExperimentFileInfo.cpp
copasi/parameterFitting/CExperimentFileInfo.h [code]
copasi/parameterFitting/CExperimentObjectMap.cpp
copasi/parameterFitting/CExperimentObjectMap.h [code]
copasi/parameterFitting/CExperimentSet.cpp
copasi/parameterFitting/CExperimentSet.h [code]
copasi/parameterFitting/CFitItem.cpp
copasi/parameterFitting/CFitItem.h [code]
copasi/parameterFitting/CFitMethod.cpp
copasi/parameterFitting/CFitMethod.h [code]
copasi/parameterFitting/CFitProblem.cpp
copasi/parameterFitting/CFitProblem.h [code]
copasi/parameterFitting/CFitTask.cpp
copasi/parameterFitting/CFitTask.h [code]
copasi/plot/COutputDefinitionVector.cpp
copasi/plot/COutputDefinitionVector.h [code]
copasi/plot/CPlotItem.cpp
copasi/plot/CPlotItem.h [code]
copasi/plot/CPlotSpecification.cpp
copasi/plot/CPlotSpecification.h [code]
copasi/plotUI/CopasiPlot.cpp
copasi/plotUI/CopasiPlot.h [code]
copasi/plotUI/COutputHandlerPlot.cpp
copasi/plotUI/COutputHandlerPlot.h [code]
copasi/plotUI/curve2dwidget.cpp
copasi/plotUI/curve2dwidget.h [code]
copasi/plotUI/HistoWidget.cpp
copasi/plotUI/HistoWidget.h [code]
copasi/plotUI/PlotSubwidget.cpp
copasi/plotUI/PlotSubwidget.h [code]
copasi/plotUI/plotwindow.cpp
copasi/plotUI/plotwindow.h [code]
copasi/plotUI/scrollbar.cpp
copasi/plotUI/scrollbar.h [code]
copasi/plotUI/scrollzoomer.cpp
copasi/plotUI/scrollzoomer.h [code]
copasi/randomGenerator/Cmt19937.cpp
copasi/randomGenerator/Cmt19937.h [code]
copasi/randomGenerator/Cr250.cpp
copasi/randomGenerator/Cr250.h [code]
copasi/randomGenerator/CRandom.cpp
copasi/randomGenerator/CRandom.h [code]
copasi/report/ArtisticLicense.h [code]
copasi/report/CArrayElementReference.cpp
copasi/report/CArrayElementReference.h [code]
copasi/report/CCopasiArray.cpp
copasi/report/CCopasiArray.h [code]
copasi/report/CCopasiContainer.cpp	Implementation file of class CCopasiContainer
copasi/report/CCopasiContainer.h [code]	Header file of class CCopasiContainer
copasi/report/CCopasiObject.cpp
copasi/report/CCopasiObject.h [code]
copasi/report/CCopasiObjectName.cpp
copasi/report/CCopasiObjectName.h [code]
copasi/report/CCopasiObjectReference.h [code]
copasi/report/CCopasiRootContainer.cpp
copasi/report/CCopasiRootContainer.h [code]
copasi/report/CCopasiStaticString.cpp
copasi/report/CCopasiStaticString.h [code]
copasi/report/CCopasiTimer.cpp
copasi/report/CCopasiTimer.h [code]
copasi/report/CKeyFactory.cpp
copasi/report/CKeyFactory.h [code]
copasi/report/COutputAssistant.cpp
copasi/report/COutputAssistant.h [code]
copasi/report/CRenameHandler.h [code]
copasi/report/CReport.cpp
copasi/report/CReport.h [code]
copasi/report/CReportDefinition.cpp
copasi/report/CReportDefinition.h [code]
copasi/report/CReportDefinitionVector.cpp
copasi/report/CReportDefinitionVector.h [code]
copasi/sbml/ConverterASTNode.cpp
copasi/sbml/ConverterASTNode.h [code]
copasi/sbml/CSBMLExporter.cpp
copasi/sbml/CSBMLExporter.h [code]
copasi/sbml/incompatibilities.h [code]
copasi/sbml/SBMLImporter.cpp
copasi/sbml/SBMLImporter.h [code]
copasi/sbml/SBMLIncompatibility.cpp
copasi/sbml/SBMLIncompatibility.h [code]
copasi/sbml/SBMLReference.cpp
copasi/sbml/SBMLReference.h [code]
copasi/sbml/SBMLUtils.cpp
copasi/sbml/SBMLUtils.h [code]
copasi/sbml/StdException.cpp
copasi/sbml/StdException.h [code]
copasi/sbml/UnitConversionFactory.cpp
copasi/sbml/UnitConversionFactory.hpp [code]
copasi/sbmlunit/CUnit.cpp
copasi/sbmlunit/CUnit.h [code]
copasi/sbmlunit/CUnitInterfaceSBML.cpp
copasi/sbmlunit/CUnitInterfaceSBML.h [code]
copasi/sbmlunit/Expression2PresentationMML.cpp
copasi/sbmlunit/Expression2PresentationMML.h [code]
copasi/sbmlunit/Expression2PresentationMMLUnits.cpp
copasi/sbmlunit/Expression2PresentationMMLUnits.h [code]
copasi/scan/CScanMethod.cpp
copasi/scan/CScanMethod.h [code]
copasi/scan/CScanProblem.cpp
copasi/scan/CScanProblem.h [code]
copasi/scan/CScanTask.cpp
copasi/scan/CScanTask.h [code]
copasi/sensitivities/CSensMethod.cpp
copasi/sensitivities/CSensMethod.h [code]
copasi/sensitivities/CSensProblem.cpp
copasi/sensitivities/CSensProblem.h [code]
copasi/sensitivities/CSensTask.cpp
copasi/sensitivities/CSensTask.h [code]
copasi/steadystate/CEigen.cpp
copasi/steadystate/CEigen.h [code]
copasi/steadystate/CMCAMethod.cpp
copasi/steadystate/CMCAMethod.h [code]
copasi/steadystate/CMCAProblem.cpp
copasi/steadystate/CMCAProblem.h [code]
copasi/steadystate/CMCATask.cpp
copasi/steadystate/CMCATask.h [code]
copasi/steadystate/CNewtonMethod.cpp
copasi/steadystate/CNewtonMethod.h [code]
copasi/steadystate/CSteadyStateMethod.cpp
copasi/steadystate/CSteadyStateMethod.h [code]
copasi/steadystate/CSteadyStateProblem.cpp
copasi/steadystate/CSteadyStateProblem.h [code]
copasi/steadystate/CSteadyStateTask.cpp
copasi/steadystate/CSteadyStateTask.h [code]
copasi/tex/CMathMLToTeX.cpp
copasi/tex/CMathMLToTeX.h [code]
copasi/tex/CStructureParser.cpp
copasi/tex/CStructureParser.h [code]
copasi/trajectory/CHybridMethod.cpp
copasi/trajectory/CHybridMethod.h [code]
copasi/trajectory/CHybridMethodLSODA.cpp
copasi/trajectory/CHybridMethodLSODA.h [code]
copasi/trajectory/CHybridNextReactionLSODAMethod.cpp
copasi/trajectory/CHybridNextReactionLSODAMethod.h [code]
copasi/trajectory/CHybridNextReactionRKMethod.cpp
copasi/trajectory/CHybridNextReactionRKMethod.h [code]
copasi/trajectory/CLsodaMethod.cpp
copasi/trajectory/CLsodaMethod.h [code]
copasi/trajectory/CStochDirectMethod.cpp
copasi/trajectory/CStochDirectMethod.h [code]
copasi/trajectory/CStochMethod.cpp
copasi/trajectory/CStochMethod.h [code]
copasi/trajectory/CStochNextReactionMethod.cpp
copasi/trajectory/CStochNextReactionMethod.h [code]
copasi/trajectory/CTauLeapMethod.cpp
copasi/trajectory/CTauLeapMethod.h [code]
copasi/trajectory/CTimeSeries.cpp
copasi/trajectory/CTimeSeries.h [code]
copasi/trajectory/CTrajAdaptiveSA.cpp
copasi/trajectory/CTrajAdaptiveSA.h [code]
copasi/trajectory/CTrajectoryMethod.cpp
copasi/trajectory/CTrajectoryMethod.h [code]
copasi/trajectory/CTrajectoryMethodDsaLsodar.cpp
copasi/trajectory/CTrajectoryMethodDsaLsodar.h [code]
copasi/trajectory/CTrajectoryProblem.cpp
copasi/trajectory/CTrajectoryProblem.h [code]
copasi/trajectory/CTrajectoryTask.cpp
copasi/trajectory/CTrajectoryTask.h [code]
copasi/tss/CODEExporter.cpp
copasi/tss/CODEExporter.h [code]
copasi/tss/CODEExporterBM.cpp
copasi/tss/CODEExporterBM.h [code]
copasi/tss/CODEExporterC.cpp
copasi/tss/CODEExporterC.h [code]
copasi/tss/CODEExporterXPPAUT.cpp
copasi/tss/CODEExporterXPPAUT.h [code]
copasi/tssanalysis/CCSPMethod.cpp
copasi/tssanalysis/CCSPMethod.h [code]
copasi/tssanalysis/CILDMMethod.cpp
copasi/tssanalysis/CILDMMethod.h [code]
copasi/tssanalysis/CILDMModifiedMethod.cpp
copasi/tssanalysis/CILDMModifiedMethod.h [code]
copasi/tssanalysis/CTSSAMethod.cpp
copasi/tssanalysis/CTSSAMethod.h [code]
copasi/tssanalysis/CTSSAProblem.cpp
copasi/tssanalysis/CTSSAProblem.h [code]
copasi/tssanalysis/CTSSATask.cpp
copasi/tssanalysis/CTSSATask.h [code]
copasi/UI/AboutDialog.cpp	Implementation file of class AboutDialog
copasi/UI/AboutDialog.h [code]	Header file of class AboutDialog
copasi/UI/CColorScale.cpp
copasi/UI/CColorScale.h [code]
copasi/UI/CCopasiPlotSelectionDialog.cpp
copasi/UI/CCopasiPlotSelectionDialog.h [code]
copasi/UI/CCopasiSelectionDialog.cpp
copasi/UI/CCopasiSelectionDialog.h [code]
copasi/UI/CCopasiSelectionWidget.cpp
copasi/UI/CCopasiSelectionWidget.h [code]
copasi/UI/CCopasiSimpleSelectionTree.cpp
copasi/UI/CCopasiSimpleSelectionTree.h [code]
copasi/UI/ChemEqValidator.h [code]
copasi/UI/CMCAResultSubwidget.cpp
copasi/UI/CMCAResultSubwidget.h [code]
copasi/UI/CMCAResultWidget.cpp
copasi/UI/CMCAResultWidget.h [code]
copasi/UI/CopasiFileDialog.cpp
copasi/UI/CopasiFileDialog.h [code]
copasi/UI/CopasiSlider.cpp
copasi/UI/CopasiSlider.h [code]
copasi/UI/CopasiTableWidget.cpp
copasi/UI/CopasiTableWidget.h [code]
copasi/UI/copasiui3window.cpp
copasi/UI/copasiui3window.h [code]
copasi/UI/copasiWidget.cpp
copasi/UI/copasiWidget.h [code]
copasi/UI/CProgressBar.cpp
copasi/UI/CProgressBar.h [code]
copasi/UI/CQArrayAnnotationsWidget.cpp
copasi/UI/CQArrayAnnotationsWidget.h [code]
copasi/UI/CQBarChart.cpp
copasi/UI/CQBarChart.h [code]
copasi/UI/CQBaseDataModel.cpp
copasi/UI/CQBaseDataModel.h [code]
copasi/UI/CQComboDelegate.cpp
copasi/UI/CQComboDelegate.h [code]
copasi/UI/CQCompartment.cpp
copasi/UI/CQCompartment.h [code]
copasi/UI/CQCompartmentDM.cpp
copasi/UI/CQCompartmentDM.h [code]
copasi/UI/CQCompartmentsWidget.cpp
copasi/UI/CQCompartmentsWidget.h [code]
copasi/UI/CQDateTimeEditDelegate.cpp
copasi/UI/CQDateTimeEditDelegate.h [code]
copasi/UI/CQDateTimeEditTableItem.cpp
copasi/UI/CQDateTimeEditTableItem.h [code]
copasi/UI/CQDifferentialEquations.cpp
copasi/UI/CQDifferentialEquations.h [code]
copasi/UI/CQEFMListWidget.cpp
copasi/UI/CQEFMListWidget.h [code]
copasi/UI/CQEFMNetReactionDM.cpp
copasi/UI/CQEFMNetReactionDM.h [code]
copasi/UI/CQEFMReactionDM.cpp
copasi/UI/CQEFMReactionDM.h [code]
copasi/UI/CQEFMResultWidget.cpp
copasi/UI/CQEFMResultWidget.h [code]
copasi/UI/CQEFMSpeciesDM.cpp
copasi/UI/CQEFMSpeciesDM.h [code]
copasi/UI/CQEFMWidget.cpp
copasi/UI/CQEFMWidget.h [code]
copasi/UI/CQEventDM.cpp
copasi/UI/CQEventDM.h [code]
copasi/UI/CQEventsWidget.cpp
copasi/UI/CQEventsWidget.h [code]
copasi/UI/CQEventWidget1.cpp
copasi/UI/CQEventWidget1.h [code]
copasi/UI/CQExpandModelData.cpp
copasi/UI/CQExpandModelData.h [code]
copasi/UI/CQExperimentData.ui.h [code]
copasi/UI/CQExperimentSelection.cpp
copasi/UI/CQExperimentSelection.h [code]
copasi/UI/CQExpressionMmlStackedWidget.cpp
copasi/UI/CQExpressionMmlStackedWidget.h [code]
copasi/UI/CQExpressionMmlWidget.cpp
copasi/UI/CQExpressionMmlWidget.h [code]
copasi/UI/CQExpressionWidget.cpp
copasi/UI/CQExpressionWidget.h [code]
copasi/UI/CQFittingItemWidget.cpp
copasi/UI/CQFittingItemWidget.h [code]
copasi/UI/CQFittingResult.cpp
copasi/UI/CQFittingResult.h [code]
copasi/UI/CQFittingResultTab1.cpp
copasi/UI/CQFittingResultTab1.h [code]
copasi/UI/CQFittingWidget.cpp
copasi/UI/CQFittingWidget.h [code]
copasi/UI/CQFluxModeDM.cpp
copasi/UI/CQFluxModeDM.h [code]
copasi/UI/CQFunctionDM.cpp
copasi/UI/CQFunctionDM.h [code]
copasi/UI/CQFunctionsWidget.cpp
copasi/UI/CQFunctionsWidget.h [code]
copasi/UI/CQGlobalQuantitiesWidget.cpp
copasi/UI/CQGlobalQuantitiesWidget.h [code]
copasi/UI/CQGlobalQuantityDM.cpp
copasi/UI/CQGlobalQuantityDM.h [code]
copasi/UI/CQIcons.cpp
copasi/UI/CQIcons.h [code]
copasi/UI/CQLayoutsWidget.cpp
copasi/UI/CQLayoutsWidget.h [code]
copasi/UI/CQLyapResultWidget.cpp
copasi/UI/CQLyapResultWidget.h [code]
copasi/UI/CQLyapWidget.cpp
copasi/UI/CQLyapWidget.h [code]
copasi/UI/CQMathMatrixWidget.cpp
copasi/UI/CQMathMatrixWidget.h [code]
copasi/UI/CQMatrixDialog.ui.h [code]
copasi/UI/CQMCAWidget.cpp
copasi/UI/CQMCAWidget.h [code]
copasi/UI/CQMergingData.cpp
copasi/UI/CQMergingData.h [code]
copasi/UI/CQMessageBox.cpp
copasi/UI/CQMessageBox.h [code]
copasi/UI/CQMmlScrollView.cpp	Implementation file of class CQMmlScrollView
copasi/UI/CQMmlScrollView.h [code]	Header file of class CQMmlScrollView
copasi/UI/CQModelValue.cpp
copasi/UI/CQModelValue.h [code]
copasi/UI/CQModelWidget.cpp
copasi/UI/CQModelWidget.h [code]
copasi/UI/CQMoietiesTaskResult.cpp
copasi/UI/CQMoietiesTaskResult.h [code]
copasi/UI/CQMoietiesTaskWidget.cpp
copasi/UI/CQMoietiesTaskWidget.h [code]
copasi/UI/CQNotes.cpp
copasi/UI/CQNotes.h [code]
copasi/UI/CQOptimizationResult.cpp
copasi/UI/CQOptimizationResult.h [code]
copasi/UI/CQOptimizationWidget.cpp
copasi/UI/CQOptimizationWidget.h [code]
copasi/UI/CQPlotDM.cpp
copasi/UI/CQPlotDM.h [code]
copasi/UI/CQPlotsWidget.cpp
copasi/UI/CQPlotsWidget.h [code]
copasi/UI/CQPreferenceDialog.cpp
copasi/UI/CQPreferenceDialog.h [code]
copasi/UI/CQProgressDialog.cpp
copasi/UI/CQProgressDialog.h [code]
copasi/UI/CQProgressItem.cpp
copasi/UI/CQProgressItem.h [code]
copasi/UI/CQProgressItemBar.cpp
copasi/UI/CQProgressItemBar.h [code]
copasi/UI/CQProgressItemBar.ui.h [code]
copasi/UI/CQProgressItemText.cpp
copasi/UI/CQProgressItemText.h [code]
copasi/UI/CQProgressItemText.ui.h [code]
copasi/UI/CQReactionDM.cpp
copasi/UI/CQReactionDM.h [code]
copasi/UI/CQReactionsWidget.cpp
copasi/UI/CQReactionsWidget.h [code]
copasi/UI/CQReportDefinition.cpp
copasi/UI/CQReportDefinition.h [code]
copasi/UI/CQReportDM.cpp
copasi/UI/CQReportDM.h [code]
copasi/UI/CQReportListItem.cpp
copasi/UI/CQReportListItem.h [code]
copasi/UI/CQReportsWidget.cpp
copasi/UI/CQReportsWidget.h [code]
copasi/UI/CQSBMLFileDialog.cpp
copasi/UI/CQSBMLFileDialog.h [code]
copasi/UI/CQSensResultWidget.cpp
copasi/UI/CQSensResultWidget.h [code]
copasi/UI/CQSortFilterProxyModel.cpp
copasi/UI/CQSortFilterProxyModel.h [code]
copasi/UI/CQSpecieDM.cpp
copasi/UI/CQSpecieDM.h [code]
copasi/UI/CQSpeciesDetail.cpp
copasi/UI/CQSpeciesDetail.h [code]
copasi/UI/CQSpeciesWidget.cpp
copasi/UI/CQSpeciesWidget.h [code]
copasi/UI/CQSpinBoxDelegate.cpp
copasi/UI/CQSpinBoxDelegate.h [code]
copasi/UI/CQSplashWidget.ui.h [code]
copasi/UI/CQStartValueReset.ui.h [code]
copasi/UI/CQSteadyStateResult.cpp
copasi/UI/CQSteadyStateResult.h [code]
copasi/UI/CQTaskHeaderWidget.ui.h [code]
copasi/UI/CQTaskThread.cpp
copasi/UI/CQTaskThread.h [code]
copasi/UI/CQTextDialog.cpp
copasi/UI/CQTextDialog.h [code]
copasi/UI/CQTextDialog.ui.h [code]
copasi/UI/CQTrajectoryWidget.cpp
copasi/UI/CQTrajectoryWidget.h [code]
copasi/UI/CQTSSAResultSubWidget.cpp
copasi/UI/CQTSSAResultSubWidget.h [code]
copasi/UI/CQTSSAResultWidget.cpp
copasi/UI/CQTSSAResultWidget.h [code]
copasi/UI/CQTSSATimeScaleWidget.cpp
copasi/UI/CQTSSATimeScaleWidget.h [code]
copasi/UI/CQTSSAWidget.cpp
copasi/UI/CQTSSAWidget.h [code]
copasi/UI/CQUpdatesWidget.cpp
copasi/UI/CQUpdatesWidget.h [code]
copasi/UI/CQValidator.cpp
copasi/UI/CQValidator.h [code]
copasi/UI/CReportDefinitionSelect.cpp
copasi/UI/CReportDefinitionSelect.h [code]
copasi/UI/CScanContainerWidget.cpp
copasi/UI/CScanContainerWidget.h [code]
copasi/UI/CScanWidgetRandom.cpp
copasi/UI/CScanWidgetRandom.h [code]
copasi/UI/CScanWidgetRepeat.cpp
copasi/UI/CScanWidgetRepeat.h [code]
copasi/UI/CScanWidgetScan.cpp
copasi/UI/CScanWidgetScan.h [code]
copasi/UI/CScanWidgetTask.cpp
copasi/UI/CScanWidgetTask.h [code]
copasi/UI/CTabWidget.cpp
copasi/UI/CTabWidget.h [code]
copasi/UI/CTimeSeriesTable.cpp
copasi/UI/CTimeSeriesTable.h [code]
copasi/UI/CUpDownSubwidget.ui.h [code]
copasi/UI/DataModel.txt.h [code]
copasi/UI/DataModelGUI.cpp
copasi/UI/DataModelGUI.h [code]
copasi/UI/DefaultplotDialog.ui.h [code]
copasi/UI/FunctionItemWidget.cpp
copasi/UI/FunctionItemWidget.h [code]
copasi/UI/FunctionWidget1.cpp
copasi/UI/FunctionWidget1.h [code]
copasi/UI/listviews.cpp
copasi/UI/listviews.h [code]
copasi/UI/MyLineEdit.cpp
copasi/UI/MyLineEdit.h [code]
copasi/UI/ObjectBrowserDialog.cpp
copasi/UI/ObjectBrowserDialog.h [code]
copasi/UI/ObjectBrowserItem.cpp
copasi/UI/ObjectBrowserItem.h [code]
copasi/UI/ObjectBrowserWidget.cpp
copasi/UI/ObjectBrowserWidget.h [code]
copasi/UI/objectdebug.ui.h [code]
copasi/UI/ParametersWidget.cpp
copasi/UI/ParametersWidget.h [code]
copasi/UI/parametertable.cpp
copasi/UI/parametertable.h [code]
copasi/UI/qtUtilities.cpp
copasi/UI/qtUtilities.h [code]
copasi/UI/ReactionsWidget1.cpp
copasi/UI/ReactionsWidget1.h [code]
copasi/UI/ScanWidget.cpp
copasi/UI/ScanWidget.h [code]
copasi/UI/SensitivitiesWidget.cpp
copasi/UI/SensitivitiesWidget.h [code]
copasi/UI/SensWidgetComboBox.cpp
copasi/UI/SensWidgetComboBox.h [code]
copasi/UI/SliderDialog.cpp
copasi/UI/SliderDialog.h [code]
copasi/UI/SliderSettingsDialog.cpp
copasi/UI/SliderSettingsDialog.h [code]
copasi/UI/StateSubwidget.cpp
copasi/UI/StateSubwidget.h [code]
copasi/UI/SteadyStateWidget.cpp
copasi/UI/SteadyStateWidget.h [code]
copasi/UI/TaskWidget.cpp
copasi/UI/TaskWidget.h [code]
copasi/UI/TimeSeriesSubwidget.cpp
copasi/UI/TimeSeriesSubwidget.h [code]
copasi/UI/TimeSeriesWidget.cpp
copasi/UI/TimeSeriesWidget.h [code]
copasi/UI/Tree.cpp
copasi/UI/Tree.h [code]
copasi/utilities/CAnnotatedMatrix.cpp	Implementation file of class CCopasiArray and CArrayAnnotation
copasi/utilities/CAnnotatedMatrix.h [code]	Header file of class CArrayAnnotation
copasi/utilities/CCopasiException.cpp
copasi/utilities/CCopasiException.h [code]
copasi/utilities/CCopasiMessage.cpp
copasi/utilities/CCopasiMessage.h [code]
copasi/utilities/CCopasiMethod.cpp
copasi/utilities/CCopasiMethod.h [code]
copasi/utilities/CCopasiNode.h [code]
copasi/utilities/CCopasiParameter.cpp
copasi/utilities/CCopasiParameter.h [code]
copasi/utilities/CCopasiParameterGroup.cpp
copasi/utilities/CCopasiParameterGroup.h [code]
copasi/utilities/CCopasiProblem.cpp
copasi/utilities/CCopasiProblem.h [code]
copasi/utilities/CCopasiTask.cpp
copasi/utilities/CCopasiTask.h [code]
copasi/utilities/CCopasiTree.h [code]
copasi/utilities/CCopasiVector.h [code]
copasi/utilities/CDependencyGraph.cpp
copasi/utilities/CDependencyGraph.h [code]
copasi/utilities/CDimension.cpp
copasi/utilities/CDimension.h [code]
copasi/utilities/CDirEntry.cpp
copasi/utilities/CDirEntry.h [code]
copasi/utilities/CIndexedPriorityQueue.cpp
copasi/utilities/CIndexedPriorityQueue.h [code]
copasi/utilities/CluX.cpp
copasi/utilities/CluX.h [code]
copasi/utilities/CMatrix.h [code]
copasi/utilities/copasimathml.h [code]
copasi/utilities/CopasiTime.cpp
copasi/utilities/CopasiTime.h [code]
copasi/utilities/COutputHandler.cpp
copasi/utilities/COutputHandler.h [code]
copasi/utilities/CProcessReport.cpp
copasi/utilities/CProcessReport.h [code]
copasi/utilities/CReadConfig.cpp
copasi/utilities/CReadConfig.h [code]
copasi/utilities/CSlider.cpp
copasi/utilities/CSlider.h [code]
copasi/utilities/CSort.h [code]
copasi/utilities/CSparseMatrix.cpp
copasi/utilities/CSparseMatrix.h [code]
copasi/utilities/CTableCell.cpp
copasi/utilities/CTableCell.h [code]
copasi/utilities/CVector.h [code]
copasi/utilities/CVersion.cpp
copasi/utilities/CVersion.h [code]
copasi/utilities/messages.h [code]
copasi/utilities/utility.cpp
copasi/utilities/utility.h [code]
copasi/wizard/wizard.cpp
copasi/wizard/wizard.h [code]
copasi/xml/CCopasiXML.cpp	Implementation file of class CCopasiXML
copasi/xml/CCopasiXML.h [code]	Header file of class CCopasiXML
copasi/xml/CCopasiXMLInterface.cpp
copasi/xml/CCopasiXMLInterface.h [code]
copasi/xml/CCopasiXMLParser.cpp
copasi/xml/CCopasiXMLParser.h [code]
copasi/xml/CCopasiXMLVersion.h [code]
copasi/xml/CExpat.cpp
copasi/xml/CExpat.h [code]
copasi/xml/CFixLocalReactionParameters.cpp
copasi/xml/CFixLocalReactionParameters.h [code]
copasi/xml/CXMLHandler.h [code]