CEFMProblem Class Reference

#include <CEFMProblem.h>

Inheritance diagram for CEFMProblem:

List of all members.

Public Member Functions
	CEFMProblem (const CCopasiContainer *pParent=NULL)
	CEFMProblem (const CEFMProblem &src, const CCopasiContainer *pParent=NULL)
virtual	~CEFMProblem ()
virtual bool	elevateChildren ()
virtual bool	setCallBack (CProcessReport *pCallBack)
virtual bool	initialize ()
const std::vector< CFluxMode > &	getFluxModes () const
std::vector< CFluxMode > &	getFluxModes ()
const std::vector< const CReaction * > &	getReorderedReactions () const
std::vector< const CReaction * > &	getReorderedReactions ()
virtual void	printResult (std::ostream *ostream) const
Protected Attributes
std::vector< CFluxMode >	mFluxModes
std::vector< const CReaction * >	mReorderedReactions

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Detailed Description

:pos -4.4,4.15

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Constructor & Destructor Documentation

CEFMProblem::CEFMProblem

(

const CCopasiContainer *

pParent = NULL

)

Default constructor

Parameters:

const

CCopasiContainer * pParent (default: NULL)

CEFMProblem::CEFMProblem	(	const CEFMProblem &	src,
		const CCopasiContainer *	pParent = NULL
	)

Copy constructor.

Parameters:

const	CEFMProblem & src
const	CCopasiContainer * pParent (default: NULL)

CEFMProblem::~CEFMProblem

(

)

[virtual]

Destructor

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Member Function Documentation

bool CEFMProblem::elevateChildren

(

)

[virtual]

This methods must be called to elevate subgroups to derived objects. The default implementation does nothing.

Returns:

bool success

Reimplemented from CCopasiParameterGroup.

const std::vector< CFluxMode > & CEFMProblem::getFluxModes

(

)

const

Return the flux modes after a successful analysis.

Returns:

const std::vector< CFluxMode > & fluxModes

std::vector< CFluxMode > & CEFMProblem::getFluxModes

(

)

Return the flux modes after a successful analysis.

Returns:

std::vector< CFluxMode > & fluxModes

const std::vector< const CReaction * > & CEFMProblem::getReorderedReactions

(

)

const

Return the reactions in the order they are used in the flux modes

Returns:

const std::vector< const CReaction * > & reorderedReactions

std::vector< const CReaction * > & CEFMProblem::getReorderedReactions

(

)

Return the reactions in the order they are used in the flux modes

Returns:

std::vector< const CReaction * > & reorderedReactions

bool CEFMProblem::initialize

(

)

[virtual]

Do all necessary initialization so that calls to calculate will be successful. This is called once from CCopasiTask::process()

Returns:

bool success

Reimplemented from CCopasiProblem.

void CEFMProblem::printResult

(

std::ostream *

ostream

)

const [virtual]

This is the output method for any result of a problem. The default implementation provided with CCopasiProblem. Does only print "Not implemented." To override this default behavior one needs to reimplement the virtual printResult function.

Parameters:

std::ostream

* ostream

Reimplemented from CCopasiProblem.

bool CEFMProblem::setCallBack

(

CProcessReport *

pCallBack

)

[virtual]

Set the call back of the problem

Parameters:

CProcessReport

* pCallBack

Returns:

bool success

Reimplemented from CCopasiProblem.

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Member Data Documentation

std::vector< CFluxMode > CEFMProblem::mFluxModes [protected]

The resulting elementary flux modes

std::vector< const CReaction * > CEFMProblem::mReorderedReactions [protected]

Reactions in the order used in the analysis

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The documentation for this class was generated from the following files:

• copasi/elementaryFluxModes/CEFMProblem.h
• copasi/elementaryFluxModes/CEFMProblem.cpp