, including all inherited members.
add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | [virtual] |
addCompartmentGlyph(CLCompartmentGlyph *glyph) | CLayout | |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addGraphicalObject(CLGraphicalObject *glyph) | CLayout | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
addMetaboliteGlyph(CLMetabGlyph *glyph) | CLayout | |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
addReactionGlyph(CLReactionGlyph *glyph) | CLayout | |
addTextGlyph(CLTextGlyph *glyph) | CLayout | |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
Array enum value | CCopasiObject | [protected] |
buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) | CCopasiObject | [static] |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiObject() | CCopasiObject | [protected] |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | [protected] |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
CLayout(const std::string &name="Layout", const CCopasiContainer *pParent=NULL) | CLayout | |
CLayout(const CLayout &src, const CCopasiContainer *pParent=NULL) | CLayout | |
CLayout(const Layout &sbml, std::map< std::string, std::string > &layoutmap, const CCopasiContainer *pParent=NULL) | CLayout | |
CLBase() | CLBase | [inline] |
CLBase(const CLBase &) | CLBase | [inline] |
CLBase(const SBase &) | CLBase | [inline] |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
Container enum value | CCopasiObject | [protected] |
DataModel enum value | CCopasiObject | [protected] |
dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | |
EmptyList | CCopasiContainer | [static] |
exportToDotFile(std::ostream &os) const | CLayout | |
exportToSBML(Layout *layout, const std::map< CCopasiObject *, SBase * > &copasimodelmap, std::map< std::string, const SBase * > &sbmlIDs) const | CLayout | |
Flag enum name | CCopasiObject | [protected] |
getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | [virtual] |
getCN() const | CCopasiObject | [virtual] |
getDimensions() const | CLayout | [inline] |
getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | [virtual] |
getKey() const | CLayout | [inline, virtual] |
getListOfCompartmentGlyphs() const | CLayout | [inline] |
getListOfGraphicalObjects() const | CLayout | [inline] |
getListOfMetaboliteGlyphs() const | CLayout | [inline] |
getListOfReactionGlyphs() const | CLayout | [inline] |
getListOfTextGlyphs() const | CLayout | [inline] |
getObject(const CCopasiObjectName &cn) const | CCopasiContainer | [virtual] |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | [virtual] |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | [virtual] |
getObjectType() const | CCopasiObject | |
getRefresh() const | CCopasiObject | |
getUnits() const | CCopasiContainer | [virtual] |
getUpdateMethod() const | CCopasiObject | |
getValueObject() const | CCopasiContainer | [virtual] |
getValuePointer() const | CCopasiObject | [virtual] |
Gui enum value | CCopasiObject | [protected] |
hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
hasUpdateMethod() const | CCopasiObject | |
initObjects() | CCopasiContainer | [protected] |
isArray() const | CCopasiObject | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
Matrix enum value | CCopasiObject | [protected] |
mDimensions | CLayout | [protected] |
mKey | CLayout | [protected] |
mObjects | CCopasiContainer | [protected] |
ModelEntity enum value | CCopasiObject | [protected] |
mvCompartments | CLayout | [protected] |
mvGraphicalObjects | CLayout | [protected] |
mvLabels | CLayout | [protected] |
mvMetabs | CLayout | [protected] |
mvReactions | CLayout | [protected] |
NameVector enum value | CCopasiObject | [protected] |
NonUniqueName enum value | CCopasiObject | [protected] |
objectMap typedef | CCopasiContainer | |
operator<<(std::ostream &os, const CLayout &g) | CLayout | [friend] |
CCopasiContainer::operator<<(std::ostream &os, const CCopasiObject &o) | CCopasiObject | [friend] |
print(std::ostream *ostream) const | CLayout | [virtual] |
Reference enum value | CCopasiObject | [protected] |
remove(CCopasiObject *pObject) | CCopasiContainer | [virtual] |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
Root enum value | CCopasiObject | [protected] |
scale(const double &scaleFactor) | CLayout | [inline, virtual] |
Separator enum value | CCopasiObject | [protected] |
setDimensions(const CLDimensions &d) | CLayout | [inline] |
setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies) | CCopasiObject | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | [virtual] |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | [inline] |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | [inline, static] |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | [inline] |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | [inline] |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | [inline] |
smpRenameHandler | CCopasiObject | [protected, static] |
StaticString enum value | CCopasiObject | [protected] |
ValueBool enum value | CCopasiObject | [protected] |
ValueDbl enum value | CCopasiObject | [protected] |
ValueInt enum value | CCopasiObject | [protected] |
ValueString enum value | CCopasiObject | [protected] |
Vector enum value | CCopasiObject | [protected] |
writeDotEdge(std::ostream &os, const std::string &id1, const std::string &id2, int t=0) const | CLayout | [protected] |
writeDotNode(std::ostream &os, const std::string &id, const std::string &label, int t=0) const | CLayout | [protected] |
~CCopasiContainer() | CCopasiContainer | [virtual] |
~CCopasiObject() | CCopasiObject | [virtual] |
~CLayout() | CLayout | |