CMCAMethod Class Reference

#include <CMCAMethod.h>

Inheritance diagram for CMCAMethod:

List of all members.

Public Member Functions
	CMCAMethod (const CCopasiContainer *pParent=NULL)
	CMCAMethod (const CMCAMethod &src, const CCopasiContainer *pParent=NULL)
virtual	~CMCAMethod ()
virtual bool	elevateChildren ()
const CMatrix< C_FLOAT64 > &	getUnscaledElasticities () const
void	calculateUnscaledElasticities (C_FLOAT64 res)
const CMatrix< C_FLOAT64 > &	getUnscaledConcentrationCC () const
int	calculateUnscaledConcentrationCC ()
const CMatrix< C_FLOAT64 > &	getUnscaledFluxCC () const
void	calculateUnscaledFluxCC (int condition)
const CMatrix< C_FLOAT64 > &	getScaledElasticities () const
const CMatrix< C_FLOAT64 > &	getScaledConcentrationCC () const
const CMatrix< C_FLOAT64 > &	getScaledFluxCC () const
const CArrayAnnotation *	getUnscaledElasticitiesAnn () const
const CArrayAnnotation *	getScaledElasticitiesAnn () const
const CArrayAnnotation *	getUnscaledConcentrationCCAnn () const
const CArrayAnnotation *	getScaledConcentrationCCAnn () const
const CArrayAnnotation *	getUnscaledFluxCCAnn () const
const CArrayAnnotation *	getScaledFluxCCAnn () const
virtual void	resizeAllMatrices ()
void	scaleMCA (int condition, C_FLOAT64 res)
void	setModel (CModel *model)
const CModel *	getModel () const
int	CalculateMCA (CSteadyStateMethod::ReturnCode status, C_FLOAT64 res)
virtual bool	process ()
C_INT32	load (CReadConfig &configBuffer)
void	setSteadyStateStatus (CSteadyStateMethod::ReturnCode SSStatus)
const CSteadyStateMethod::ReturnCode &	getSteadyStateStatus () const
void	setFactor (C_FLOAT64 factor)
void	setSteadyStateResolution (C_FLOAT64 factor)
virtual bool	isValidProblem (const CCopasiProblem *pProblem)

---

Constructor & Destructor Documentation

CMCAMethod::CMCAMethod

(

const CCopasiContainer *

pParent = NULL

)

Default constructor

Parameters:

const

CCopasiContainer * pParent (Defailt: NULL)

Default constructor

CMCAMethod::CMCAMethod	(	const CMCAMethod &	src,
		const CCopasiContainer *	pParent = NULL
	)

Copy constructor

Parameters:

const	CMCAMethod & src
const	CCopasiContainer * pParent (Defailt: NULL)

CMCAMethod::~CMCAMethod

(

)

[virtual]

User defined constructor

Parameters:

refer

to Model and factor Deconstructor

Deconstructor

---

Member Function Documentation

int CMCAMethod::CalculateMCA	(	CSteadyStateMethod::ReturnCode	status,
		C_FLOAT64	res
	)

the steady state MCA entry point

Parameters:

ss_solution	refer to steady-state solution
refer	to the resolution

int CMCAMethod::calculateUnscaledConcentrationCC

(

)

void CMCAMethod::calculateUnscaledElasticities

(

C_FLOAT64

res

)

void CMCAMethod::calculateUnscaledFluxCC

(

int

condition

)

bool CMCAMethod::elevateChildren

(

)

[virtual]

This methods must be called to elevate subgroups to derived objects. The default implementation does nothing.

Returns:

bool success

Reimplemented from CCopasiParameterGroup.

const CModel * CMCAMethod::getModel

(

)

const

Get the Model

const CMatrix<C_FLOAT64>& CMCAMethod::getScaledConcentrationCC

(

)

const [inline]

const CArrayAnnotation* CMCAMethod::getScaledConcentrationCCAnn

(

)

const [inline]

const CMatrix<C_FLOAT64>& CMCAMethod::getScaledElasticities

(

)

const [inline]

const CArrayAnnotation* CMCAMethod::getScaledElasticitiesAnn

(

)

const [inline]

const CMatrix<C_FLOAT64>& CMCAMethod::getScaledFluxCC

(

)

const [inline]

const CArrayAnnotation* CMCAMethod::getScaledFluxCCAnn

(

)

const [inline]

const CSteadyStateMethod::ReturnCode& CMCAMethod::getSteadyStateStatus

(

)

const [inline]

const CMatrix<C_FLOAT64>& CMCAMethod::getUnscaledConcentrationCC

(

)

const [inline]

const CArrayAnnotation* CMCAMethod::getUnscaledConcentrationCCAnn

(

)

const [inline]

const CMatrix<C_FLOAT64>& CMCAMethod::getUnscaledElasticities

(

)

const [inline]

const CArrayAnnotation* CMCAMethod::getUnscaledElasticitiesAnn

(

)

const [inline]

const CMatrix<C_FLOAT64>& CMCAMethod::getUnscaledFluxCC

(

)

const [inline]

const CArrayAnnotation* CMCAMethod::getUnscaledFluxCCAnn

(

)

const [inline]

bool CMCAMethod::isValidProblem

(

const CCopasiProblem *

pProblem

)

[virtual]

Check if the method is suitable for this problem

Returns:

bool suitability of the method

Reimplemented from CCopasiMethod.

C_INT32 CMCAMethod::load

(

CReadConfig &

configBuffer

)

Read SSMCAUnscaled from configuration file

bool CMCAMethod::process

(

)

[virtual]

void CMCAMethod::resizeAllMatrices

(

)

[virtual]

Resizes all result matrices and updates the corresponding array annotations. This needs to be called before output initialization (in case the output references parts of the matrix) from the task initialization, but it also needs to be called before selecting elements of the matrices in the object selection dialog. The model needs to be set before calling this.

void CMCAMethod::scaleMCA	(	int	condition,
		C_FLOAT64	res
	)

Scales the coefficients (i.e. Kacser format, rather than Reder)

void CMCAMethod::setFactor

(

C_FLOAT64

factor

)

void CMCAMethod::setModel

(

CModel *

model

)

Set the Model

void CMCAMethod::setSteadyStateResolution

(

C_FLOAT64

factor

)

void CMCAMethod::setSteadyStateStatus

(

CSteadyStateMethod::ReturnCode

SSStatus

)

---

The documentation for this class was generated from the following files:

• copasi/steadystate/CMCAMethod.h
• copasi/steadystate/CMCAMethod.cpp