, including all inherited members.
| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | [virtual] |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| Array enum value | CCopasiObject | [protected] |
| ASSIGNMENT enum value | CModelEntity | |
| buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) | CCopasiObject | [static] |
| calculate() | CMetab | [virtual] |
| CAnnotation() | CAnnotation | |
| CAnnotation(const CAnnotation &src) | CAnnotation | |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiObject() | CCopasiObject | [protected] |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | [protected] |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| cleanup() | CMetab | |
| clearDirectDependencies() | CCopasiObject | |
| clearRefresh() | CCopasiObject | |
| CMetab(const std::string &name="NoName", const CCopasiContainer *pParent=NULL) | CMetab | |
| CMetab(const CMetab &src, const CCopasiContainer *pParent=NULL) | CMetab | |
| CModelEntity(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="ModelEntity", const unsigned C_INT32 &flag=CCopasiObject::Container|CCopasiObject::ValueDbl) | CModelEntity | |
| CModelEntity(const CModelEntity &src, const CCopasiContainer *pParent=NULL) | CModelEntity | |
| CMoiety::add(C_FLOAT64 value, CMetab *pMetabolite) | CMetab | [friend] |
| compile() | CMetab | [virtual] |
| compileInitialValueDependencies(const bool &updateConcentration) | CMetab | |
| Container enum value | CCopasiObject | [protected] |
| convertToConcentration(const C_FLOAT64 &number, const CCompartment &compartment, const CModel &model) | CMetab | [static] |
| convertToNumber(const C_FLOAT64 &concentration, const CCompartment &compartment, const CModel &model) | CMetab | [static] |
| DataModel enum value | CCopasiObject | [protected] |
| dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | |
| EmptyList | CCopasiContainer | [static] |
| FIXED enum value | CModelEntity | |
| Flag enum name | CCopasiObject | [protected] |
| getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CMetab | [virtual] |
| getCN() const | CCopasiObject | [virtual] |
| getCompartment() const | CMetab | |
| getConcentration() const | CMetab | |
| getConcentrationRate() const | CMetab | |
| getConcentrationReference() const | CMetab | |
| getDeletedObjects() const | CMetab | [virtual] |
| getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | [virtual] |
| getExpression() const | CModelEntity | |
| getExpressionPtr() const | CModelEntity | |
| getExpressionPtr() | CModelEntity | |
| getInitialConcentration() const | CMetab | |
| getInitialConcentrationReference() const | CMetab | |
| getInitialExpression() const | CModelEntity | |
| getInitialExpressionPtr() const | CModelEntity | |
| getInitialExpressionPtr() | CModelEntity | |
| getInitialValue() const | CModelEntity | |
| getInitialValueReference() const | CModelEntity | |
| getKey() const | CModelEntity | [virtual] |
| getMiriamAnnotation() const | CAnnotation | |
| getModel() const | CMetab | |
| getNotes() const | CAnnotation | |
| getObject(const CCopasiObjectName &cn) const | CCopasiContainer | [virtual] |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CMetab | [virtual] |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| getObjects() const | CCopasiContainer | [virtual] |
| getObjectType() const | CCopasiObject | |
| getRate() const | CModelEntity | |
| getRateReference() const | CModelEntity | |
| getRefresh() const | CCopasiObject | |
| getSBMLId() const | CModelEntity | |
| getStatus() const | CModelEntity | |
| getTransitionTime() const | CMetab | |
| getUnits() const | CCopasiContainer | [virtual] |
| getUpdateMethod() const | CCopasiObject | |
| getValue() const | CModelEntity | |
| getValueObject() const | CMetab | [virtual] |
| getValuePointer() const | CMetab | [virtual] |
| getValueReference() const | CModelEntity | |
| Gui enum value | CCopasiObject | [protected] |
| hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| hasUpdateMethod() const | CCopasiObject | |
| initCompartment(const CCompartment *pCompartment=NULL) | CMetab | |
| isArray() const | CCopasiObject | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isDependent() const | CMetab | |
| isFixed() const | CModelEntity | [inline] |
| isInitialConcentrationChangeAllowed() | CMetab | |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isReference() const | CCopasiObject | |
| isRoot() const | CCopasiObject | |
| isSeparator() const | CCopasiObject | |
| isStaticString() const | CCopasiObject | |
| isUsed() const | CModelEntity | |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| load(CReadConfig &configbuffer) | CMetab | |
| Matrix enum value | CCopasiObject | [protected] |
| mKey | CModelEntity | [protected] |
| mObjects | CCopasiContainer | [protected] |
| ModelEntity enum value | CCopasiObject | [protected] |
| mpConcRateReference | CMetab | [protected] |
| mpConcReference | CMetab | [protected] |
| mpExpression | CModelEntity | [protected] |
| mpIConcReference | CMetab | [protected] |
| mpInitialExpression | CModelEntity | [protected] |
| mpIValue | CModelEntity | [protected] |
| mpIValueReference | CModelEntity | [protected] |
| mpModel | CModelEntity | [protected] |
| mpRateReference | CModelEntity | [protected] |
| mpTTReference | CMetab | [protected] |
| mpValue | CModelEntity | [protected] |
| mpValueReference | CModelEntity | [protected] |
| mRate | CModelEntity | [protected] |
| mSBMLId | CModelEntity | [protected] |
| NameVector enum value | CCopasiObject | [protected] |
| NonUniqueName enum value | CCopasiObject | [protected] |
| objectMap typedef | CCopasiContainer | |
| ODE enum value | CModelEntity | |
| operator<<(std::ostream &os, const CMetab &d) | CMetab | [friend] |
| CModelEntity::operator<<(std::ostream &os, const CCopasiObject &o) | CCopasiObject | [friend] |
| operator=(const CMetabOld &rhs) | CMetab | |
| print(std::ostream *ostream) const | CCopasiObject | [virtual] |
| REACTIONS enum value | CModelEntity | |
| Reference enum value | CCopasiObject | [protected] |
| refreshConcentration() | CMetab | |
| refreshConcentrationRate() | CMetab | |
| refreshInitialConcentration() | CMetab | |
| refreshInitialValue() | CMetab | [virtual] |
| refreshNumber() | CMetab | |
| refreshRate() | CMetab | |
| refreshTransitionTime() | CMetab | |
| remove(CCopasiObject *pObject) | CCopasiContainer | [virtual] |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| Root enum value | CCopasiObject | [protected] |
| Separator enum value | CCopasiObject | [protected] |
| setConcentration(const C_FLOAT64 concentration) | CMetab | |
| setDependentOn(const CMoiety *pMoiety) | CMetab | |
| setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies) | CCopasiObject | |
| setExpression(const std::string &expression) | CModelEntity | |
| setExpressionPtr(CExpression *pExpression) | CModelEntity | |
| setInitialConcentration(const C_FLOAT64 &initialConcentration) | CMetab | |
| setInitialExpression(const std::string &expression) | CModelEntity | |
| setInitialExpressionPtr(CExpression *pExpression) | CModelEntity | |
| setInitialValue(const C_FLOAT64 &initialValue) | CModelEntity | [virtual] |
| setInitialValuePtr(C_FLOAT64 *pInitialValue) | CModelEntity | |
| setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
| setNotes(const std::string ¬es) | CAnnotation | |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CMetab | [virtual] |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setRate(const C_FLOAT64 &rate) | CModelEntity | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | [inline] |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | [inline, static] |
| setSBMLId(const std::string &id) | CModelEntity | |
| setStatus(const CModelEntity::Status &status) | CMetab | [virtual] |
| setTransitionTime(const C_FLOAT64 &transitionTime) | CMetab | |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | [inline] |
| setUsed(const bool &used) | CModelEntity | |
| setValue(const C_FLOAT64 &value) | CModelEntity | [virtual] |
| setValuePtr(C_FLOAT64 *pValue) | CModelEntity | |
| smpRenameHandler | CCopasiObject | [protected, static] |
| StaticString enum value | CCopasiObject | [protected] |
| Status enum name | CModelEntity | |
| StatusName | CModelEntity | [static] |
| TIME enum value | CModelEntity | |
| ValueBool enum value | CCopasiObject | [protected] |
| ValueDbl enum value | CCopasiObject | [protected] |
| ValueInt enum value | CCopasiObject | [protected] |
| ValueString enum value | CCopasiObject | [protected] |
| Vector enum value | CCopasiObject | [protected] |
| XMLStatus | CModelEntity | [static] |
| ~CAnnotation() | CAnnotation | |
| ~CCopasiContainer() | CCopasiContainer | [virtual] |
| ~CCopasiObject() | CCopasiObject | [virtual] |
| ~CMetab() | CMetab | |
| ~CModelEntity() | CModelEntity | |
1.7.5.1
