, including all inherited members.
add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | [virtual] |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
Array enum value | CCopasiObject | [protected] |
ASSIGNMENT enum value | CModelEntity | |
buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) | CCopasiObject | [static] |
calculate() | CModelEntity | [virtual] |
CAnnotation() | CAnnotation | |
CAnnotation(const CAnnotation &src) | CAnnotation | |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiObject() | CCopasiObject | [protected] |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | [protected] |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
CModelEntity(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="ModelEntity", const unsigned C_INT32 &flag=CCopasiObject::Container|CCopasiObject::ValueDbl) | CModelEntity | |
CModelEntity(const CModelEntity &src, const CCopasiContainer *pParent=NULL) | CModelEntity | |
CModelValue(const std::string &name="NoName", const CCopasiContainer *pParent=NULL) | CModelValue | |
CModelValue(const CModelValue &src, const CCopasiContainer *pParent=NULL) | CModelValue | |
compile() | CModelEntity | [virtual] |
Container enum value | CCopasiObject | [protected] |
DataModel enum value | CCopasiObject | [protected] |
dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | |
EmptyList | CCopasiContainer | [static] |
FIXED enum value | CModelEntity | |
Flag enum name | CCopasiObject | [protected] |
getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | [virtual] |
getCN() const | CCopasiObject | [virtual] |
getDeletedObjects() const | CModelEntity | [virtual] |
getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | [virtual] |
getExpression() const | CModelEntity | |
getExpressionPtr() const | CModelEntity | |
getExpressionPtr() | CModelEntity | |
getInitialExpression() const | CModelEntity | |
getInitialExpressionPtr() const | CModelEntity | |
getInitialExpressionPtr() | CModelEntity | |
getInitialValue() const | CModelEntity | |
getInitialValueReference() const | CModelEntity | |
getKey() const | CModelEntity | [virtual] |
getMiriamAnnotation() const | CAnnotation | |
getNotes() const | CAnnotation | |
getObject(const CCopasiObjectName &cn) const | CCopasiContainer | [virtual] |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | [virtual] |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | [virtual] |
getObjectType() const | CCopasiObject | |
getRate() const | CModelEntity | |
getRateReference() const | CModelEntity | |
getRefresh() const | CCopasiObject | |
getSBMLId() const | CModelEntity | |
getStatus() const | CModelEntity | |
getUnits() const | CCopasiContainer | [virtual] |
getUpdateMethod() const | CCopasiObject | |
getValue() const | CModelEntity | |
getValueObject() const | CModelEntity | [virtual] |
getValuePointer() const | CModelEntity | [virtual] |
getValueReference() const | CModelEntity | |
Gui enum value | CCopasiObject | [protected] |
hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
hasUpdateMethod() const | CCopasiObject | |
isArray() const | CCopasiObject | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isFixed() const | CModelEntity | [inline] |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isUsed() const | CModelEntity | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
Matrix enum value | CCopasiObject | [protected] |
mKey | CModelEntity | [protected] |
mObjects | CCopasiContainer | [protected] |
ModelEntity enum value | CCopasiObject | [protected] |
mpExpression | CModelEntity | [protected] |
mpInitialExpression | CModelEntity | [protected] |
mpIValue | CModelEntity | [protected] |
mpIValueReference | CModelEntity | [protected] |
mpModel | CModelEntity | [protected] |
mpRateReference | CModelEntity | [protected] |
mpValue | CModelEntity | [protected] |
mpValueReference | CModelEntity | [protected] |
mRate | CModelEntity | [protected] |
mSBMLId | CModelEntity | [protected] |
NameVector enum value | CCopasiObject | [protected] |
NonUniqueName enum value | CCopasiObject | [protected] |
objectMap typedef | CCopasiContainer | |
ODE enum value | CModelEntity | |
operator<<(std::ostream &os, const CModelValue &d) | CModelValue | [friend] |
CModelEntity::operator<<(std::ostream &os, const CCopasiObject &o) | CCopasiObject | [friend] |
print(std::ostream *ostream) const | CCopasiObject | [virtual] |
REACTIONS enum value | CModelEntity | |
Reference enum value | CCopasiObject | [protected] |
refreshInitialValue() | CModelEntity | [virtual] |
remove(CCopasiObject *pObject) | CCopasiContainer | [virtual] |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
Root enum value | CCopasiObject | [protected] |
Separator enum value | CCopasiObject | [protected] |
setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies) | CCopasiObject | |
setExpression(const std::string &expression) | CModelEntity | |
setExpressionPtr(CExpression *pExpression) | CModelEntity | |
setInitialExpression(const std::string &expression) | CModelEntity | |
setInitialExpressionPtr(CExpression *pExpression) | CModelEntity | |
setInitialValue(const C_FLOAT64 &initialValue) | CModelEntity | [virtual] |
setInitialValuePtr(C_FLOAT64 *pInitialValue) | CModelEntity | |
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
setNotes(const std::string ¬es) | CAnnotation | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CModelEntity | [virtual] |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setRate(const C_FLOAT64 &rate) | CModelEntity | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | [inline] |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | [inline, static] |
setSBMLId(const std::string &id) | CModelEntity | |
setStatus(const CModelEntity::Status &status) | CModelEntity | [virtual] |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | [inline] |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | [inline] |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | [inline] |
setUsed(const bool &used) | CModelEntity | |
setValue(const C_FLOAT64 &value) | CModelEntity | [virtual] |
setValuePtr(C_FLOAT64 *pValue) | CModelEntity | |
smpRenameHandler | CCopasiObject | [protected, static] |
StaticString enum value | CCopasiObject | [protected] |
Status enum name | CModelEntity | |
StatusName | CModelEntity | [static] |
TIME enum value | CModelEntity | |
ValueBool enum value | CCopasiObject | [protected] |
ValueDbl enum value | CCopasiObject | [protected] |
ValueInt enum value | CCopasiObject | [protected] |
ValueString enum value | CCopasiObject | [protected] |
Vector enum value | CCopasiObject | [protected] |
XMLStatus | CModelEntity | [static] |
~CAnnotation() | CAnnotation | |
~CCopasiContainer() | CCopasiContainer | [virtual] |
~CCopasiObject() | CCopasiObject | [virtual] |
~CModelEntity() | CModelEntity | |
~CModelValue() | CModelValue | |