, including all inherited members.
| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | [virtual] |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addModifier(const std::string &metabKey, const C_FLOAT64 &multiplicity=1.0) | CReaction | |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addParameterMapping(const C_INT32 &index, const std::string &key) | CReaction | |
| addParameterMapping(const std::string ¶meterName, const std::string &key) | CReaction | |
| addProduct(const std::string &metabKey, const C_FLOAT64 &multiplicity=1.0) | CReaction | |
| addSubstrate(const std::string &metabKey, const C_FLOAT64 &multiplicity=1.0) | CReaction | |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| Array enum value | CCopasiObject | [protected] |
| buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) | CCopasiObject | [static] |
| calculateFlux() | CReaction | |
| calculatePartialDerivative(C_FLOAT64 *pXi, const C_FLOAT64 &derivationFactor, const C_FLOAT64 &resolution) | CReaction | |
| calculateParticleFlux() | CReaction | |
| CAnnotation() | CAnnotation | |
| CAnnotation(const CAnnotation &src) | CAnnotation | |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiObject() | CCopasiObject | [protected] |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | [protected] |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| cleanup() | CReaction | |
| clearDirectDependencies() | CCopasiObject | |
| clearParameterMapping(const std::string ¶meterName) | CReaction | |
| clearParameterMapping(const C_INT32 &index) | CReaction | |
| clearRefresh() | CCopasiObject | |
| compile() | CReaction | |
| Container enum value | CCopasiObject | [protected] |
| CReaction(const std::string &name="NoName", const CCopasiContainer *pParent=NULL) | CReaction | |
| CReaction(const CReaction &src, const CCopasiContainer *pParent=NULL) | CReaction | |
| DataModel enum value | CCopasiObject | [protected] |
| dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | |
| EmptyList | CCopasiContainer | [static] |
| Flag enum name | CCopasiObject | [protected] |
| getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| getChemEq() const | CReaction | |
| getChemEq() | CReaction | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CReaction | [virtual] |
| getCN() const | CCopasiObject | [virtual] |
| getCompartmentNumber() const | CReaction | |
| getDeletedObjects() const | CReaction | [virtual] |
| getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | [virtual] |
| getExpressionTree() | CReaction | |
| getFlux() const | CReaction | |
| getFunction() const | CReaction | |
| getFunctionParameters() const | CReaction | |
| getKey() const | CReaction | [virtual] |
| getLargestCompartment() const | CReaction | |
| getMiriamAnnotation() const | CAnnotation | |
| getNotes() const | CAnnotation | |
| getObject(const CCopasiObjectName &cn) const | CCopasiContainer | [virtual] |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CReaction | [virtual] |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| getObjects() const | CCopasiContainer | [virtual] |
| getObjectType() const | CCopasiObject | |
| getParameterMapping(const std::string ¶meterName) const | CReaction | |
| getParameterMappings() const | CReaction | [inline] |
| getParameterMappings() | CReaction | [inline] |
| getParameters() const | CReaction | |
| getParameters() | CReaction | |
| getParameterValue(const std::string ¶meterName) const | CReaction | |
| getParticleFlux() const | CReaction | |
| getParticleFluxReference() | CReaction | |
| getRefresh() const | CCopasiObject | |
| getSBMLId() const | CReaction | |
| getUnits() const | CCopasiContainer | [virtual] |
| getUpdateMethod() const | CCopasiObject | |
| getValueObject() const | CCopasiContainer | [virtual] |
| getValuePointer() const | CCopasiObject | [virtual] |
| Gui enum value | CCopasiObject | [protected] |
| hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| hasUpdateMethod() const | CCopasiObject | |
| isArray() const | CCopasiObject | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isLocalParameter(const C_INT32 &index) const | CReaction | |
| isLocalParameter(const std::string ¶meterName) const | CReaction | |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isReference() const | CCopasiObject | |
| isReversible() const | CReaction | |
| isRoot() const | CCopasiObject | |
| isSeparator() const | CCopasiObject | |
| isStaticString() const | CCopasiObject | |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| load(CReadConfig &configbuffer) | CReaction | |
| Matrix enum value | CCopasiObject | [protected] |
| mObjects | CCopasiContainer | [protected] |
| ModelEntity enum value | CCopasiObject | [protected] |
| NameVector enum value | CCopasiObject | [protected] |
| NonUniqueName enum value | CCopasiObject | [protected] |
| objectMap typedef | CCopasiContainer | |
| operator<<(std::ostream &os, const CReaction &d) | CReaction | [friend] |
| CCopasiContainer::operator<<(std::ostream &os, const CCopasiObject &o) | CCopasiObject | [friend] |
| print(std::ostream *ostream) const | CCopasiObject | [virtual] |
| printDebug() const | CReaction | |
| Reference enum value | CCopasiObject | [protected] |
| remove(CCopasiObject *pObject) | CCopasiContainer | [virtual] |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| Root enum value | CCopasiObject | [protected] |
| Separator enum value | CCopasiObject | [protected] |
| setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies) | CCopasiObject | |
| setFunction(const std::string &functionName) | CReaction | |
| setFunction(CFunction *pFunction) | CReaction | |
| setFunctionFromExpressionTree(CEvaluationTree *tree, std::map< CCopasiObject *, SBase * > &copasi2sbmlmap, CFunctionDB *pFunctionDB) | CReaction | |
| setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
| setNotes(const std::string ¬es) | CAnnotation | |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CReaction | [virtual] |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setParameterMapping(const C_INT32 &index, const std::string &key) | CReaction | |
| setParameterMapping(const std::string ¶meterName, const std::string &key) | CReaction | |
| setParameterMappingVector(const std::string ¶meterName, const std::vector< std::string > &keys) | CReaction | |
| setParameterValue(const std::string ¶meterName, const C_FLOAT64 &value, const bool &updateStatus=true) | CReaction | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | [inline] |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | [inline, static] |
| setReversible(bool reversible) | CReaction | |
| setSBMLId(const std::string &id) | CReaction | |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | [inline] |
| smpRenameHandler | CCopasiObject | [protected, static] |
| StaticString enum value | CCopasiObject | [protected] |
| ValueBool enum value | CCopasiObject | [protected] |
| ValueDbl enum value | CCopasiObject | [protected] |
| ValueInt enum value | CCopasiObject | [protected] |
| ValueString enum value | CCopasiObject | [protected] |
| Vector enum value | CCopasiObject | [protected] |
| ~CAnnotation() | CAnnotation | |
| ~CCopasiContainer() | CCopasiContainer | [virtual] |
| ~CCopasiObject() | CCopasiObject | [virtual] |
| ~CReaction() | CReaction | |
1.7.5.1
