, including all inherited members.
| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | [virtual] |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| Array enum value | CCopasiObject | [protected] |
| buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) | CCopasiObject | [static] |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiObject() | CCopasiObject | [protected] |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | [protected] |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| CCopasiTask(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const std::string &type="Task") | CCopasiTask | |
| CCopasiTask(const Type &taskType, const CCopasiContainer *pParent=NULL, const std::string &type="Task") | CCopasiTask | |
| CCopasiTask(const CCopasiTask &src, const CCopasiContainer *pParent=NULL) | CCopasiTask | |
| clearDirectDependencies() | CCopasiObject | |
| clearRefresh() | CCopasiObject | |
| Container enum value | CCopasiObject | [protected] |
| crosssection enum value | CCopasiTask | |
| CTSSATask(const CCopasiContainer *pParent=NULL) | CTSSATask | |
| CTSSATask(const CTSSATask &src, const CCopasiContainer *pParent=NULL) | CTSSATask | |
| DataModel enum value | CCopasiObject | [protected] |
| dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | |
| EmptyList | CCopasiContainer | [static] |
| eOutputFlagBase enum name | CCopasiTask | |
| FINISH enum value | CCopasiTask | |
| Flag enum name | CCopasiObject | [protected] |
| fluxMode enum value | CCopasiTask | |
| getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| getCallBack() const | CCopasiTask | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | [virtual] |
| getCN() const | CCopasiObject | [virtual] |
| getDescription() const | CCopasiTask | |
| getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | [virtual] |
| getKey() const | CCopasiTask | [virtual] |
| getMethod() | CCopasiTask | |
| getMethod() const | CCopasiTask | |
| getObject(const CCopasiObjectName &cn) const | CCopasiContainer | [virtual] |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | [virtual] |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| getObjects() const | CCopasiContainer | [virtual] |
| getObjectType() const | CCopasiObject | |
| getOutputHandler() const | CCopasiTask | |
| getOutputMode() const | CCopasiTask | [inline] |
| getProblem() | CCopasiTask | |
| getProblem() const | CCopasiTask | |
| getRefresh() const | CCopasiObject | |
| getReport() | CCopasiTask | |
| getResult() const | CCopasiTask | |
| getSliders() | CCopasiTask | |
| getState() | CTSSATask | |
| getTimeSeries() const | CTSSATask | |
| getType() const | CCopasiTask | |
| getUnits() const | CCopasiContainer | [virtual] |
| getUpdateMethod() const | CCopasiObject | |
| getValueObject() const | CCopasiContainer | [virtual] |
| getValuePointer() const | CCopasiObject | [virtual] |
| Gui enum value | CCopasiObject | [protected] |
| hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| hasUpdateMethod() const | CCopasiObject | |
| initialize(const OutputFlag &of, COutputHandler *pOutputHandler, std::ostream *pOstream) | CTSSATask | [virtual] |
| INITIALIZE enum value | CCopasiTask | |
| isArray() const | CCopasiObject | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isReference() const | CCopasiObject | |
| isRoot() const | CCopasiObject | |
| isScheduled() const | CCopasiTask | |
| isSeparator() const | CCopasiObject | |
| isStaticString() const | CCopasiObject | |
| isUpdateModel() const | CCopasiTask | |
| isValidMethod(const unsigned C_INT32 &method, const unsigned C_INT32 *validMethods) | CCopasiTask | [static] |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| lyap enum value | CCopasiTask | |
| Matrix enum value | CCopasiObject | [protected] |
| mca enum value | CCopasiTask | |
| mDescription | CCopasiTask | [protected] |
| mDoOutput | CCopasiTask | [protected] |
| mKey | CCopasiTask | [protected] |
| mObjects | CCopasiContainer | [protected] |
| ModelEntity enum value | CCopasiObject | [protected] |
| moieties enum value | CCopasiTask | |
| mOutputCounter | CCopasiTask | [protected] |
| mpCallBack | CCopasiTask | [protected] |
| mpInitialState | CCopasiTask | [protected] |
| mpMethod | CCopasiTask | [protected] |
| mpOutputHandler | CCopasiTask | [protected] |
| mpProblem | CCopasiTask | [protected] |
| mpSliders | CCopasiTask | [protected] |
| mReport | CCopasiTask | [protected] |
| mResult | CCopasiTask | [protected] |
| mScheduled | CCopasiTask | [protected] |
| mType | CCopasiTask | [protected] |
| mUpdateModel | CCopasiTask | [protected] |
| NameVector enum value | CCopasiObject | [protected] |
| NO_OUTPUT enum value | CCopasiTask | |
| NonUniqueName enum value | CCopasiObject | [protected] |
| objectMap typedef | CCopasiContainer | |
| ONLY_TIME_SERIES enum value | CCopasiTask | |
| operator<<(std::ostream &os, const CCopasiObject &o) | CCopasiObject | [friend] |
| optimization enum value | CCopasiTask | |
| output(const COutputInterface::Activity &activity) | CCopasiTask | [virtual] |
| OUTPUT enum value | CCopasiTask | |
| OUTPUT_COMPLETE enum value | CCopasiTask | |
| OutputFlag enum name | CCopasiTask | |
| parameterFitting enum value | CCopasiTask | |
| PLOT enum value | CCopasiTask | |
| print(std::ostream *ostream) const | CCopasiObject | [virtual] |
| process(const bool &useInitialValues) | CTSSATask | [virtual] |
| processStart(const bool &useInitialValues) | CTSSATask | |
| processStep(const C_FLOAT64 &nextTime) | CTSSATask | |
| Reference enum value | CCopasiObject | [protected] |
| remove(CCopasiObject *pObject) | CCopasiContainer | [virtual] |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| REPORT enum value | CCopasiTask | |
| restore() | CTSSATask | [virtual] |
| Root enum value | CCopasiObject | [protected] |
| scan enum value | CCopasiTask | |
| sens enum value | CCopasiTask | |
| separate(const COutputInterface::Activity &activity) | CCopasiTask | [virtual] |
| Separator enum value | CCopasiObject | [protected] |
| setCallBack(CProcessReport *pCallBack) | CCopasiTask | [virtual] |
| setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies) | CCopasiObject | |
| setMethodType(const int &type) | CTSSATask | [virtual] |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | [virtual] |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | [inline] |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | [inline, static] |
| setScheduled(const bool &scheduled) | CCopasiTask | |
| setType(const Type &type) | CCopasiTask | |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | [inline] |
| setUpdateModel(const bool &updateModel) | CCopasiTask | |
| smpRenameHandler | CCopasiObject | [protected, static] |
| StaticString enum value | CCopasiObject | [protected] |
| steadyState enum value | CCopasiTask | |
| STREAM enum value | CCopasiTask | |
| TIME_SERIES enum value | CCopasiTask | |
| timeCourse enum value | CCopasiTask | |
| tssAnalysis enum value | CCopasiTask | |
| Type enum name | CCopasiTask | |
| TypeName | CCopasiTask | [static] |
| unset enum value | CCopasiTask | |
| updateMatrices() | CCopasiTask | [inline, virtual] |
| ValidMethods | CTSSATask | [static] |
| ValueBool enum value | CCopasiObject | [protected] |
| ValueDbl enum value | CCopasiObject | [protected] |
| ValueInt enum value | CCopasiObject | [protected] |
| ValueString enum value | CCopasiObject | [protected] |
| Vector enum value | CCopasiObject | [protected] |
| XMLType | CCopasiTask | [static] |
| ~CCopasiContainer() | CCopasiContainer | [virtual] |
| ~CCopasiObject() | CCopasiObject | [virtual] |
| ~CCopasiTask() | CCopasiTask | [virtual] |
| ~CTSSATask() | CTSSATask | |
1.7.5.1
