CEFMAlgorithm Class Reference

#include <CEFMAlgorithm.h>

Inheritance diagram for CEFMAlgorithm:

List of all members.

Classes
class	CSpeciesOrderNode
Public Member Functions
	CEFMAlgorithm (const CEFMAlgorithm &src, const CCopasiContainer *pParent=NULL)
	~CEFMAlgorithm ()
virtual bool	calculate ()
void	calculateFluxModes ()
virtual bool	initialize ()
Protected Member Functions
	CEFMAlgorithm (const CCopasiContainer *pParent=NULL)
	CEFMAlgorithm (const CCopasiMethod::SubType subType, const CCopasiContainer *pParent=NULL)
Protected Attributes
CModel *	mpModel
std::vector< std::vector < C_FLOAT64 > >	mStoi
unsigned C_INT32	mReversible
CTableauMatrix *	mpCurrentTableau
CTableauMatrix *	mpNextTableau
unsigned C_INT32	mStep
unsigned C_INT32	mMaxStep
unsigned C_INT32	mhSteps
std::vector< unsigned C_INT32 >	mIndexSet
Friends
CEFMMethod *	CEFMMethod::createMethod (CCopasiMethod::SubType subType)

---

Constructor & Destructor Documentation

CEFMAlgorithm::CEFMAlgorithm

(

const CCopasiContainer *

pParent = NULL

)

[protected]

Default constructor

Parameters:

const

CCopasiContainer * pParent (Default: NULL)

CEFMAlgorithm::CEFMAlgorithm	(	const CCopasiMethod::SubType	subType,
		const CCopasiContainer *	pParent = NULL
	)		[protected]

Constructor to be called by derived methods

Parameters:

const	CCopasiMethod::SubType subType
const	CCopasiContainer * pParent (Default: NULL)

CEFMAlgorithm::CEFMAlgorithm	(	const CEFMAlgorithm &	src,
		const CCopasiContainer *	pParent = NULL
	)

Copy Constructor

Parameters:

const

CEFMAlgorithm & src

CEFMAlgorithm::~CEFMAlgorithm

(

)

Destructor

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Member Function Documentation

bool CEFMAlgorithm::calculate

(

void

)

[virtual]

Execute the optimization algorithm calling simulation routine when needed. It is noted that this procedure can give feedback of its progress by the callback function set with SetCallback. @ return success;

Reimplemented from CEFMMethod.

void CEFMAlgorithm::calculateFluxModes

(

)

Do the actual calculation

bool CEFMAlgorithm::initialize

(

)

[virtual]

Initialize arrays and pointer.

Returns:

bool success

Reimplemented from CEFMMethod.

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Friends And Related Function Documentation

CEFMMethod* CEFMMethod::createMethod

(

CCopasiMethod::SubType

subType

)

[friend]

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Member Data Documentation

unsigned C_INT32 CEFMAlgorithm::mhSteps [protected]

Handle to the process report item "Current Step"

std::vector<unsigned C_INT32> CEFMAlgorithm::mIndexSet [protected]

Vector set containing all step indexes for iteration when calculating flux modes.

unsigned C_INT32 CEFMAlgorithm::mMaxStep [protected]

The max step used for process report.

CTableauMatrix* CEFMAlgorithm::mpCurrentTableau [protected]

A pointer to the current tableau matrix

CModel* CEFMAlgorithm::mpModel [protected]

A pointer to the model

CTableauMatrix* CEFMAlgorithm::mpNextTableau [protected]

A pointer to the next tableaun matrix

unsigned C_INT32 CEFMAlgorithm::mReversible [protected]

The number of reversible reactions.

unsigned C_INT32 CEFMAlgorithm::mStep [protected]

The current step used for process report.

std::vector< std::vector< C_FLOAT64 > > CEFMAlgorithm::mStoi [protected]

Matrix containing the reordered stoichiometry matrix.

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The documentation for this class was generated from the following files:

• copasi/elementaryFluxModes/CEFMAlgorithm.h
• copasi/elementaryFluxModes/CEFMAlgorithm.cpp