#include <CEFMMethod.h>

Inheritance diagram for CEFMMethod:

Public Member Functions
	CEFMMethod (const CEFMMethod &src, const CCopasiContainer *pParent=NULL)
virtual	~CEFMMethod ()
virtual bool	calculate ()
virtual bool	initialize ()
virtual bool	isValidProblem (const CCopasiProblem *pProblem)
Static Public Member Functions
static CEFMMethod *	createMethod (CCopasiMethod::SubType subType=CCopasiMethod::RandomSearch)
Protected Member Functions
	CEFMMethod (const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL)
Protected Attributes
std::vector< CFluxMode > *	mpFluxModes
std::vector< const CReaction * > *	mpReorderedReactions

Constructor & Destructor Documentation

CEFMMethod::CEFMMethod	(	const CCopasiTask::Type &	taskType,
		const SubType &	subType,
		const CCopasiContainer *	pParent = `NULL`
	)		`[protected]`

Specific constructor

Parameters:

const	CCopasiTask::Type & type
const	CCopasiMethod::SubType & subType
const	CCopasiContainer * pParent (default: NULL)

CEFMMethod::CEFMMethod	(	const CEFMMethod &	src,
		const CCopasiContainer *	pParent = `NULL`
	)

Copy constructor

Parameters:

const	CEFMMethod & src
const	CCopasiContainer * pParent (default: NULL)

CEFMMethod::~CEFMMethod ( ) [virtual]

Destructor

Member Function Documentation

bool CEFMMethod::calculate ( void ) [virtual]

Execute the optimization algorithm calling simulation routine when needed. It is noted that this procedure can give feedback of its progress by the callback function set with SetCallback. @ return success;

Reimplemented in CBitPatternMethod, CBitPatternTreeMethod, and CEFMAlgorithm.

CEFMMethod * CEFMMethod::createMethod ( CCopasiMethod::SubType subType = CCopasiMethod::RandomSearch ) [static]

Create a EFM method. Note: the returned object has to be released after use with delete

CEFMMethod class This class describes the interface to all optimization methods. The various method like RandomSearch or GA have to be derived from this class.

Created for COPASI by Stefan Hoops 2002

bool CEFMMethod::initialize ( ) [virtual]

Initialize arrays and pointer.