, including all inherited members.
| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | [virtual] |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addGroup(const std::string &name) | CCopasiParameterGroup | |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addParameter(const CCopasiParameter ¶meter) | CCopasiParameterGroup | |
| addParameter(const std::string &name, const CCopasiParameter::Type type) | CCopasiParameterGroup | |
| addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value) | CCopasiParameterGroup | [inline] |
| addParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| Array enum value | CCopasiObject | [protected] |
| assertGroup(const std::string &name) | CCopasiParameterGroup | |
| assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue) | CCopasiParameterGroup | [inline] |
| beginIndex() const | CCopasiParameterGroup | |
| beginName() const | CCopasiParameterGroup | |
| BOOL enum value | CCopasiParameter | |
| buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) | CCopasiObject | [static] |
| calculateStatistics() | CExperiment | |
| calculateWeights() | CExperiment | |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiObject() | CCopasiObject | [protected] |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | [protected] |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL) | CCopasiParameter | |
| CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter") | CCopasiParameter | |
| CCopasiParameterGroup() | CCopasiParameterGroup | [protected] |
| CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL) | CCopasiParameterGroup | |
| CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup") | CCopasiParameterGroup | |
| CExperiment(const CCopasiContainer *pParent, const std::string &name="Experiment") | CExperiment | |
| CExperiment(const CExperiment &src, const CCopasiContainer *pParent=NULL) | CExperiment | |
| CExperiment(const CCopasiParameterGroup &group, const CCopasiContainer *pParent=NULL) | CExperiment | |
| clear() | CCopasiParameterGroup | |
| clearDirectDependencies() | CCopasiObject | |
| clearRefresh() | CCopasiObject | |
| CN enum value | CCopasiParameter | |
| compare(const CExperiment *lhs, const CExperiment *rhs) | CExperiment | [static] |
| compile(const std::vector< CCopasiContainer * > listOfContainer=CCopasiContainer::EmptyList) | CExperiment | |
| Container enum value | CCopasiObject | [protected] |
| DataModel enum value | CCopasiObject | [protected] |
| dependent enum value | CExperiment | |
| dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | |
| DOUBLE enum value | CCopasiParameter | |
| elevateChildren() | CExperiment | [virtual] |
| EmptyList | CCopasiContainer | [static] |
| endIndex() const | CCopasiParameterGroup | |
| endName() const | CCopasiParameterGroup | |
| EXPRESSION enum value | CCopasiParameter | |
| FILE enum value | CCopasiParameter | |
| Flag enum name | CCopasiObject | [protected] |
| getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | [virtual] |
| getCN() const | CCopasiObject | [virtual] |
| getColumnNames() const | CExperiment | |
| getCount(CCopasiObject *const &pObject) const | CExperiment | |
| getDefaultWeight(const CCopasiObject *const &pObject) const | CExperiment | |
| getDependentData() const | CExperiment | |
| getDependentObjects() const | CExperiment | |
| getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | [virtual] |
| getErrorMean() const | CExperiment | |
| getErrorMean(CCopasiObject *const &pObject) const | CExperiment | |
| getErrorMeanSD() const | CExperiment | |
| getErrorMeanSD(CCopasiObject *const &pObject, const C_FLOAT64 &errorMean) const | CExperiment | |
| getExperimentType() const | CExperiment | |
| getFileName() const | CExperiment | |
| getFirstRow() const | CExperiment | |
| getFittingPoints() const | CExperiment | |
| getGroup(const std::string &name) | CCopasiParameterGroup | |
| getGroup(const std::string &name) const | CCopasiParameterGroup | |
| getGroup(const unsigned C_INT32 &index) | CCopasiParameterGroup | |
| getGroup(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| getHeaderRow() const | CExperiment | |
| getIndependentData() const | CExperiment | |
| getIndex(const std::string &name) const | CCopasiParameterGroup | |
| getKey(const std::string &name) const | CCopasiParameterGroup | |
| getKey(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| CCopasiParameter::getKey() const | CCopasiParameter | [virtual] |
| getLastRow() const | CExperiment | |
| getName(const unsigned C_INT32 &index) const | CCopasiParameterGroup | [virtual] |
| getNumColumns() const | CExperiment | |
| getNumDataRows() const | CExperiment | |
| getObject(const CCopasiObjectName &cn) const | CCopasiContainer | [virtual] |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiParameter | [virtual] |
| getObjectiveValue() const | CExperiment | |
| getObjectiveValue(CCopasiObject *const &pObject) const | CExperiment | |
| getObjectMap() | CExperiment | |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| getObjects() const | CCopasiContainer | [virtual] |
| getObjectType() const | CCopasiObject | |
| getParameter(const std::string &name) | CCopasiParameterGroup | |
| getParameter(const std::string &name) const | CCopasiParameterGroup | |
| getParameter(const unsigned C_INT32 &index) | CCopasiParameterGroup | |
| getParameter(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| getRefresh() const | CCopasiObject | |
| getRMS() const | CExperiment | |
| getRMS(CCopasiObject *const &pObject) const | CExperiment | |
| getSeparator() const | CExperiment | |
| getTimeData() const | CExperiment | |
| getType(const std::string &name) const | CCopasiParameterGroup | |
| getType(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| CCopasiParameter::getType() const | CCopasiParameter | |
| getUnits() const | CCopasiContainer | [virtual] |
| getUpdateMethod() const | CCopasiObject | |
| getValue(const std::string &name) const | CCopasiParameterGroup | |
| getValue(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| getValue(const std::string &name) | CCopasiParameterGroup | |
| getValue(const unsigned C_INT32 &index) | CCopasiParameterGroup | |
| CCopasiParameter::getValue() const | CCopasiParameter | |
| CCopasiParameter::getValue() | CCopasiParameter | |
| getValueObject() const | CCopasiContainer | [virtual] |
| getValuePointer() const | CCopasiParameter | [virtual] |
| getWeightMethod() const | CExperiment | |
| GROUP enum value | CCopasiParameter | |
| guessColumnNumber() const | CExperiment | |
| Gui enum value | CCopasiObject | [protected] |
| hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| hasUpdateMethod() const | CCopasiObject | |
| ignore enum value | CExperiment | |
| independent enum value | CExperiment | |
| index_iterator typedef | CCopasiParameterGroup | |
| initObjects() | CCopasiContainer | [protected] |
| INT enum value | CCopasiParameter | |
| INVALID enum value | CCopasiParameter | |
| isArray() const | CCopasiObject | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isReference() const | CCopasiObject | |
| isRoot() const | CCopasiObject | |
| isRowOriented() const | CExperiment | |
| isSeparator() const | CCopasiObject | |
| isStaticString() const | CCopasiObject | |
| isValidValue(const C_FLOAT64 &value) const | CCopasiParameter | |
| isValidValue(const C_INT32 &value) const | CCopasiParameter | |
| isValidValue(const unsigned C_INT32 &value) const | CCopasiParameter | |
| isValidValue(const bool &value) const | CCopasiParameter | |
| isValidValue(const std::string &value) const | CCopasiParameter | |
| isValidValue(const CCopasiObjectName &value) const | CCopasiParameter | |
| isValidValue(const std::vector< CCopasiParameter * > &value) const | CCopasiParameter | |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| KEY enum value | CCopasiParameter | |
| Matrix enum value | CCopasiObject | [protected] |
| MEAN enum value | CExperiment | |
| MEAN_SQUARE enum value | CExperiment | |
| mKey | CCopasiParameter | [protected] |
| mObjects | CCopasiContainer | [protected] |
| ModelEntity enum value | CCopasiObject | [protected] |
| mSize | CCopasiParameter | [protected] |
| mValue | CCopasiParameter | [protected] |
| name_iterator typedef | CCopasiParameterGroup | |
| NameVector enum value | CCopasiObject | [protected] |
| NonUniqueName enum value | CCopasiObject | [protected] |
| objectMap typedef | CCopasiContainer | |
| operator<<(std::ostream &os, const CCopasiParameterGroup &o) | CCopasiParameterGroup | [friend] |
| CCopasiParameter::operator<<(std::ostream &os, const CCopasiParameter &o) | CCopasiParameter | [friend] |
| CCopasiContainer::operator<<(std::ostream &os, const CCopasiObject &o) | CCopasiObject | [friend] |
| operator=(const CExperiment &rhs) | CExperiment | |
| CCopasiParameterGroup::operator=(const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | |
| CCopasiParameter::operator=(const CCopasiParameter &rhs) | CCopasiParameter | |
| operator==(const CExperiment &lhs, const CExperiment &rhs) | CExperiment | [friend] |
| CCopasiParameterGroup::operator==(const CCopasiParameterGroup &lhs, const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | [friend] |
| CCopasiParameter::operator==(const CCopasiParameter &lhs, const CCopasiParameter &rhs) | CCopasiParameter | [friend] |
| parameterGroup typedef | CCopasiParameterGroup | |
| print(std::ostream *ostream) const | CCopasiParameterGroup | [virtual] |
| printResult(std::ostream *ostream) const | CExperiment | [virtual] |
| read(std::istream &in, unsigned C_INT32 ¤tLine) | CExperiment | |
| readColumnNames() | CExperiment | |
| Reference enum value | CCopasiObject | [protected] |
| remove(CCopasiObject *pObject) | CCopasiContainer | [virtual] |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| removeParameter(const std::string &name) | CCopasiParameterGroup | |
| removeParameter(const unsigned C_INT32 &index) | CCopasiParameterGroup | |
| restoreModelIndependentData() | CExperiment | |
| Root enum value | CCopasiObject | [protected] |
| SD enum value | CExperiment | |
| Separator enum value | CCopasiObject | [protected] |
| setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies) | CCopasiObject | |
| setExperimentType(const CCopasiTask::Type &type) | CExperiment | |
| setFileName(const std::string &fileName) | CExperiment | |
| setFirstRow(const unsigned C_INT32 &firstRow) | CExperiment | |
| setHeaderRow(const unsigned C_INT32 &headerRow) | CExperiment | |
| setIsRowOriented(const bool &isRowOriented) | CExperiment | |
| setLastRow(const unsigned C_INT32 &lastRow) | CExperiment | |
| setNumColumns(const unsigned C_INT32 &cols) | CExperiment | |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | [virtual] |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | [inline] |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | [inline, static] |
| setSeparator(const std::string &seperator) | CExperiment | |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | [inline] |
| setValue(const std::string &name, const CType &value) | CCopasiParameterGroup | [inline] |
| setValue(const unsigned C_INT32 &index, const CType &value) | CCopasiParameterGroup | [inline] |
| CCopasiParameter::setValue(const CType &value) | CCopasiParameter | [inline] |
| CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value) | CCopasiParameter | |
| setWeightMethod(const WeightMethod &weightMethod) | CExperiment | |
| size() const | CCopasiParameterGroup | |
| smpRenameHandler | CCopasiObject | [protected, static] |
| StaticString enum value | CCopasiObject | [protected] |
| STRING enum value | CCopasiParameter | |
| sumOfSquares(const unsigned C_INT32 &index, C_FLOAT64 *&residuals) const | CExperiment | |
| sumOfSquaresStore(const unsigned C_INT32 &index, C_FLOAT64 *&dependentValues) | CExperiment | |
| swap(const unsigned C_INT32 &iFrom, const unsigned C_INT32 &iTo) | CCopasiParameterGroup | |
| swap(index_iterator &from, index_iterator &to) | CCopasiParameterGroup | |
| time enum value | CExperiment | |
| Type enum name | CExperiment | |
| TypeName | CExperiment | [static] |
| UDOUBLE enum value | CCopasiParameter | |
| UINT enum value | CCopasiParameter | |
| updateFittedPoints() | CExperiment | |
| updateFittedPointValues(const unsigned C_INT32 &index) | CExperiment | |
| updateModelWithIndependentData(const unsigned C_INT32 &index) | CExperiment | |
| ValueBool enum value | CCopasiObject | [protected] |
| ValueDbl enum value | CCopasiObject | [protected] |
| ValueInt enum value | CCopasiObject | [protected] |
| ValueString enum value | CCopasiObject | [protected] |
| Vector enum value | CCopasiObject | [protected] |
| WeightMethod enum name | CExperiment | |
| WeightMethodName | CExperiment | [static] |
| WeightMethodType | CExperiment | [static] |
| XMLType | CExperiment | [static] |
| ~CCopasiContainer() | CCopasiContainer | [virtual] |
| ~CCopasiObject() | CCopasiObject | [virtual] |
| ~CCopasiParameter() | CCopasiParameter | [virtual] |
| ~CCopasiParameterGroup() | CCopasiParameterGroup | [virtual] |
| ~CExperiment() | CExperiment | [virtual] |
1.7.5.1
