, including all inherited members.
add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | [virtual] |
addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
Array enum value | CCopasiObject | [protected] |
buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) | CCopasiObject | [static] |
calcValue() | CExpression | [virtual] |
calls(std::set< std::string > &list) const | CEvaluationTree | |
CAnnotation() | CAnnotation | |
CAnnotation(const CAnnotation &src) | CAnnotation | |
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
CCopasiObject() | CCopasiObject | [protected] |
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | [protected] |
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
CEvaluationTree(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const Type &type=Function) | CEvaluationTree | |
CEvaluationTree(const CEvaluationTree &src, const CCopasiContainer *pParent=NULL) | CEvaluationTree | |
CExpression(const std::string &name="Expression", const CCopasiContainer *pParent=NULL) | CExpression | |
CExpression(const CExpression &src, const CCopasiContainer *pParent=NULL) | CExpression | |
clearDirectDependencies() | CCopasiObject | |
clearRefresh() | CCopasiObject | |
compile(std::vector< CCopasiContainer * > listOfContainer=CCopasiContainer::EmptyList) | CExpression | [virtual] |
CEvaluationTree::compile() | CEvaluationTree | [virtual] |
compileNodes() | CEvaluationTree | [protected] |
completeEvaluationTreeList(std::vector< CEvaluationTree * > &list, const unsigned C_INT32 &added=0) | CEvaluationTree | [static] |
Container enum value | CCopasiObject | [protected] |
convertASTNode(const ASTNode &node) | CEvaluationTree | [static] |
copy(const CEvaluationTree &src) | CEvaluationTree | [static] |
create(CEvaluationTree::Type type) | CEvaluationTree | [static] |
createInitialExpression(const CExpression &expression, const CCopasiDataModel *pDataModel) | CExpression | [static] |
DataModel enum value | CCopasiObject | [protected] |
dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | |
dependsOnTree(const std::string &name) const | CEvaluationTree | |
EmptyList | CCopasiContainer | [static] |
Expression enum value | CEvaluationTree | |
Flag enum name | CCopasiObject | [protected] |
Function enum value | CEvaluationTree | |
getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | [virtual] |
getCN() const | CCopasiObject | [virtual] |
getDeletedObjects() const | CEvaluationTree | |
getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | [virtual] |
getDisplay_C_String() const | CExpression | |
getDisplay_MMD_String() const | CExpression | |
getDisplay_XPP_String() const | CExpression | |
getDisplayString() const | CExpression | |
getErrorPosition() const | CEvaluationTree | |
getInfix() const | CEvaluationTree | |
getKey() const | CEvaluationTree | [virtual] |
getListOfContainer() const | CExpression | |
getMiriamAnnotation() const | CAnnotation | |
getNodeList() const | CEvaluationTree | |
getNodeObject(const CCopasiObjectName &CN) const | CExpression | [virtual] |
getNotes() const | CAnnotation | |
getObject(const CCopasiObjectName &cn) const | CCopasiContainer | [virtual] |
getObjectAncestor(const std::string &type) const | CCopasiObject | |
getObjectDataModel() | CCopasiObject | |
getObjectDataModel() const | CCopasiObject | |
getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | [virtual] |
getObjectName() const | CCopasiObject | |
getObjectParent() const | CCopasiObject | |
getObjects() const | CCopasiContainer | [virtual] |
getObjectType() const | CCopasiObject | |
getRefresh() const | CCopasiObject | |
getRoot() | CEvaluationTree | |
getRoot() const | CEvaluationTree | |
getSBMLId() const | CEvaluationTree | |
getType() const | CEvaluationTree | |
getUnits() const | CCopasiContainer | [virtual] |
getUpdateMethod() const | CCopasiObject | |
getValueObject() const | CCopasiContainer | [virtual] |
getValuePointer() const | CCopasiObject | [virtual] |
getVariableIndex(const std::string &name) const | CEvaluationTree | [virtual] |
getVariableValue(const unsigned C_INT32 &index) const | CEvaluationTree | [virtual] |
Gui enum value | CCopasiObject | [protected] |
hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
hasCircularDependency() const | CEvaluationTree | |
hasUpdateMethod() const | CCopasiObject | |
isArray() const | CCopasiObject | |
isBoolean() const | CEvaluationTree | |
isContainer() const | CCopasiObject | |
isDataModel() const | CCopasiObject | |
isMatrix() const | CCopasiObject | |
isNameVector() const | CCopasiObject | |
isNonUniqueName() const | CCopasiObject | |
isReference() const | CCopasiObject | |
isRoot() const | CCopasiObject | |
isSeparator() const | CCopasiObject | |
isStaticString() const | CCopasiObject | |
isUsable() const | CEvaluationTree | |
isValueBool() const | CCopasiObject | |
isValueDbl() const | CCopasiObject | |
isValueInt() const | CCopasiObject | |
isValueString() const | CCopasiObject | |
isVector() const | CCopasiObject | |
MassAction enum value | CEvaluationTree | |
Matrix enum value | CCopasiObject | [protected] |
mBooleanRequired | CEvaluationTree | [protected] |
mDisplayString | CExpression | [protected] |
mInfix | CEvaluationTree | [protected] |
mObjects | CCopasiContainer | [protected] |
ModelEntity enum value | CCopasiObject | [protected] |
mpListOfContainer | CExpression | [protected] |
mpNodeList | CEvaluationTree | [protected] |
mpRoot | CEvaluationTree | [protected] |
mSBMLId | CEvaluationTree | |
mType | CEvaluationTree | [protected] |
mUsable | CEvaluationTree | [protected] |
mValue | CEvaluationTree | [protected] |
NameVector enum value | CCopasiObject | [protected] |
NonUniqueName enum value | CCopasiObject | [protected] |
objectMap typedef | CCopasiContainer | |
operator<<(std::ostream &os, const CCopasiObject &o) | CCopasiObject | [friend] |
parse() | CEvaluationTree | [protected] |
PreDefined enum value | CEvaluationTree | |
print(std::ostream *ostream) const | CCopasiObject | [virtual] |
Reference enum value | CCopasiObject | [protected] |
refresh() | CExpression | |
remove(CCopasiObject *pObject) | CCopasiContainer | [virtual] |
removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
Root enum value | CCopasiObject | [protected] |
Separator enum value | CCopasiObject | [protected] |
setBooleanRequired(const bool &booleanRequired) | CExpression | |
setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies) | CCopasiObject | |
setInfix(const std::string &infix) | CExpression | [virtual] |
setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
setNotes(const std::string ¬es) | CAnnotation | |
setObjectName(const std::string &name) | CCopasiObject | |
setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | [virtual] |
setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
setObjectValue(const C_INT32 &value) | CCopasiObject | |
setObjectValue(const bool &value) | CCopasiObject | |
setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | [inline] |
setRenameHandler(CRenameHandler *rh) | CCopasiObject | [inline, static] |
setRoot(CEvaluationNode *pRootNode) | CEvaluationTree | |
setSBMLId(const std::string &id) | CEvaluationTree | |
setTree(const ASTNode &pRootNode) | CEvaluationTree | |
setType(const CEvaluationTree::Type &type) | CEvaluationTree | [protected] |
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | [inline] |
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | [inline] |
setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | [inline] |
smpRenameHandler | CCopasiObject | [protected, static] |
StaticString enum value | CCopasiObject | [protected] |
toAST(const CCopasiDataModel *pDataModel) const | CEvaluationTree | [virtual] |
Type enum name | CEvaluationTree | |
TypeName | CEvaluationTree | [static] |
updateInfix() | CExpression | |
updateTree() | CEvaluationTree | |
UserDefined enum value | CEvaluationTree | |
ValueBool enum value | CCopasiObject | [protected] |
ValueDbl enum value | CCopasiObject | [protected] |
ValueInt enum value | CCopasiObject | [protected] |
ValueString enum value | CCopasiObject | [protected] |
Vector enum value | CCopasiObject | [protected] |
writeMathML(std::ostream &out, bool fullExpand, unsigned C_INT32 l) const | CExpression | |
XMLType | CEvaluationTree | [static] |
~CAnnotation() | CAnnotation | |
~CCopasiContainer() | CCopasiContainer | [virtual] |
~CCopasiObject() | CCopasiObject | [virtual] |
~CEvaluationTree() | CEvaluationTree | [virtual] |
~CExpression() | CExpression | [virtual] |