#include <CILDMModifiedMethod.h>

Inheritance diagram for CILDMModifiedMethod:

Public Member Functions
	CILDMModifiedMethod (const CILDMModifiedMethod &src, const CCopasiContainer *pParent=NULL)
	~CILDMModifiedMethod ()
virtual void	initializeParameter ()
virtual void	step (const double &deltaT)
virtual void	start (const CState *initialState)
void	deuflhard_metab (C_INT &slow, C_INT &info)
void	newton_new (C_INT *index_metab, C_INT &slow, C_INT &info)
void	newton_for_timestep (C_INT metabolite_number, C_FLOAT64 &y_consistent, C_INT &info)
void	evalsort (C_FLOAT64 reval, C_INT index, const C_INT &dim_x)
const CArrayAnnotation *	getVslowPrintAnn () const
const CArrayAnnotation *	getVslowSpacePrintAnn () const
const CArrayAnnotation *	getVfastSpacePrintAnn () const
const CArrayAnnotation *	getVslowMetabPrintAnn () const
void	setVectors (int slowMode)
void	emptyVectors ()
void	createAnnotationsM ()
bool	setAnnotationM (int step)
void	printResult (std::ostream *ostream) const
Public Attributes
std::vector< CMatrix< C_FLOAT64 > >	mVec_mVslow
std::vector< CMatrix< C_FLOAT64 > >	mVec_mVslowMetab
std::vector< CVector< C_FLOAT64 > >	mVec_mVslowSpace
std::vector< CVector< C_FLOAT64 > >	mVec_mVfastSpace
CArrayAnnotation *	pVslowPrintAnn
CArrayAnnotation *	pVslowMetabPrintAnn
CArrayAnnotation *	pVslowSpacePrintAnn
CArrayAnnotation *	pVfastSpacePrintAnn
CArrayAnnotation *	pTmp1
CArrayAnnotation *	pTmp2
CArrayAnnotation *	pTmp3
CArrayAnnotation *	pTmp4
CMatrix< C_FLOAT64 >	mVslowPrint
CMatrix< C_FLOAT64 >	mVslowSpacePrint
CMatrix< C_FLOAT64 >	mVfastSpacePrint
CMatrix< C_FLOAT64 >	mVslowMetabPrint
Friends
CTSSAMethod *	CTSSAMethod::createTSSAMethod (CCopasiMethod::SubType subType, CTSSAProblem *pProblem)

Constructor & Destructor Documentation

CILDMModifiedMethod::CILDMModifiedMethod	(	const CILDMModifiedMethod &	src,
		const CCopasiContainer *	pParent = `NULL`
	)

Copy constructor.

Parameters:

const CILDMMethod &	src
const	CCopasiContainer * pParent (default: NULL)

CILDMModifiedMethod::~CILDMModifiedMethod ( )

Destructor.

Member Function Documentation

void CILDMModifiedMethod::createAnnotationsM ( )

create the CArraAnnotations for every ILDM-tab in the CQTSSAResultSubWidget input for each CArraAnnotations is a seperate CMatrix

Create the CArraAnnotations for every ILDM-tab in the CQTSSAResultSubWidget. Input for each CArraAnnotations is a seperate CMatrix.

Reimplemented from CTSSAMethod.

void CILDMModifiedMethod::deuflhard_metab	(	C_INT &	slow,
		C_INT &	info
	)

Deuflhard Iteration: Prove Deuflhard criteria, find consistent initial value for DAE output: info - if Deuflhard is satisfied

void CILDMModifiedMethod::emptyVectors ( )

empty every vector to be able to fill them with new values for a new calculation also nullify the step counter

Empty every vector to be able to fill them with new values for a new calculation. Also nullify the step counter.

Reimplemented from CTSSAMethod.

void CILDMModifiedMethod::evalsort	(	C_FLOAT64 *	reval,
		C_INT *	index,
		const C_INT &	dim
	)

EVALSORT for vector sorting

const CArrayAnnotation* CILDMModifiedMethod::getVfastSpacePrintAnn ( ) const [inline]

const CArrayAnnotation* CILDMModifiedMethod::getVslowMetabPrintAnn ( ) const [inline]

const CArrayAnnotation* CILDMModifiedMethod::getVslowPrintAnn ( ) const [inline]

return CArrayAnnotation for visualization in ILDM-tab in the CQTSSAResultSubWidget

const CArrayAnnotation* CILDMModifiedMethod::getVslowSpacePrintAnn ( ) const [inline]

void CILDMModifiedMethod::initializeParameter ( ) [virtual]

Intialize the method parameter

Reimplemented from CTSSAMethod.

void CILDMModifiedMethod::newton_for_timestep	(	C_INT	metabolite_number,
		C_FLOAT64 &	y_consistent,
		C_INT &	info
	)

NEWTON for "postprove": Prove of "fast" varibles Output: y_consistent, info

void CILDMModifiedMethod::newton_new	(	C_INT *	index_metab,
		C_INT &	slow,
		C_INT &	info
	)

void CILDMModifiedMethod::printResult ( std::ostream * ostream ) const [virtual]

print of the standart report sequence for ILDM Method

Parameters:

std::ostream * ostream

Reimplemented from CCopasiMethod.

bool CILDMModifiedMethod::setAnnotationM ( int step ) [virtual]

set the every CArrayAnnotation for the requested step set the desription of CArayAnnotation for both dimensions

Set the every CArrayAnnotation for the requested step. Set also the desription of CArayAnnotation for both dimensions:

dimension description could consists of some std::srings some strings contain the Time Scale values for requested step
dimension description could consists of arrays of CommonNames

Implements CTSSAMethod.

void CILDMModifiedMethod::setVectors ( int slowMode )

upgrade all vectors with values from actually calculalion for current step

Reimplemented from CTSSAMethod.

void CILDMModifiedMethod::start ( const CState * initialState ) [virtual]

This instructs the method to prepare for integration starting with the initialState given.

Parameters:

const CState * initialState

Reimplemented from CTSSAMethod.

void CILDMModifiedMethod::step ( const double & deltaT ) [virtual]

This instructs the method to calculate a time step of deltaT starting with the current state, i.e., the result of the previous step. The new state (after deltaT) is expected in the current state. The return value is the actual timestep taken.

Parameters:

const double & deltaT

Schur Decomposition of Jacobian (reordered). Output: mQ - transformation matrix mR - block upper triangular matrix (with ordered eigenvalues)

Schur transformation of Jacobian

end of the block %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

Begin of the block %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

end of the of block %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

Reimplemented from CTSSAMethod.