, including all inherited members.
| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | [virtual] |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addVariable(const std::string &name, CFunctionParameter::Role usage=CFunctionParameter::VARIABLE, const CFunctionParameter::DataType &type=CFunctionParameter::FLOAT64) | CFunction | |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| Array enum value | CCopasiObject | [protected] |
| buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) | CCopasiObject | [static] |
| calcValue(const CCallParameters< C_FLOAT64 > &callParameters) | CMassAction | [virtual] |
| calls(std::set< std::string > &list) const | CEvaluationTree | |
| CAnnotation() | CAnnotation | |
| CAnnotation(const CAnnotation &src) | CAnnotation | |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiObject() | CCopasiObject | [protected] |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | [protected] |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| CEvaluationTree(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const Type &type=Function) | CEvaluationTree | |
| CEvaluationTree(const CEvaluationTree &src, const CCopasiContainer *pParent=NULL) | CEvaluationTree | |
| CFunction(const std::string &name="NoName", const CCopasiContainer *pParent=NULL, const Type &type=Function) | CFunction | |
| CFunction(const CFunction &src, const CCopasiContainer *pParent=NULL) | CFunction | |
| clearDirectDependencies() | CCopasiObject | |
| clearRefresh() | CCopasiObject | |
| CMassAction(const std::string &name="NoName", const CCopasiContainer *pParent=NULL) | CMassAction | |
| CMassAction(const CFunction &src, const CCopasiContainer *pParent=NULL) | CMassAction | |
| CMassAction(const TriLogic &reversible, const CCopasiContainer *pParent=NULL) | CMassAction | |
| compile() | CMassAction | [virtual] |
| compileNodes() | CEvaluationTree | [protected] |
| completeEvaluationTreeList(std::vector< CEvaluationTree * > &list, const unsigned C_INT32 &added=0) | CEvaluationTree | [static] |
| Container enum value | CCopasiObject | [protected] |
| convertASTNode(const ASTNode &node) | CEvaluationTree | [static] |
| copy(const CEvaluationTree &src) | CEvaluationTree | [static] |
| create(CEvaluationTree::Type type) | CEvaluationTree | [static] |
| createCopy() const | CFunction | |
| createListOfParametersForMathML(std::vector< std::vector< std::string > > &env) | CFunction | |
| DataModel enum value | CCopasiObject | [protected] |
| dependsOn(const C_FLOAT64 *parameter, const CCallParameters< C_FLOAT64 > &callParameters) const | CMassAction | [virtual] |
| CEvaluationTree::dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | |
| dependsOnTree(const std::string &name) const | CEvaluationTree | |
| EmptyList | CCopasiContainer | [static] |
| Expression enum value | CEvaluationTree | |
| Flag enum name | CCopasiObject | [protected] |
| Function enum value | CEvaluationTree | |
| getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | [virtual] |
| getCN() const | CCopasiObject | [virtual] |
| getDeletedObjects() const | CEvaluationTree | |
| getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | [virtual] |
| getErrorPosition() const | CEvaluationTree | |
| getInfix() const | CEvaluationTree | |
| getKey() const | CEvaluationTree | [virtual] |
| getMiriamAnnotation() const | CAnnotation | |
| getNodeList() const | CEvaluationTree | |
| getNotes() const | CAnnotation | |
| getObject(const CCopasiObjectName &cn) const | CCopasiContainer | [virtual] |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiObject | [virtual] |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| getObjects() const | CCopasiContainer | [virtual] |
| getObjectType() const | CCopasiObject | |
| getRefresh() const | CCopasiObject | |
| getRoot() | CEvaluationTree | |
| getRoot() const | CEvaluationTree | |
| getSBMLId() const | CEvaluationTree | |
| getType() const | CEvaluationTree | |
| getUnits() const | CCopasiContainer | [virtual] |
| getUpdateMethod() const | CCopasiObject | |
| getValueObject() const | CCopasiContainer | [virtual] |
| getValuePointer() const | CCopasiObject | [virtual] |
| getVariableIndex(const std::string &name) const | CFunction | [virtual] |
| getVariables() | CFunction | |
| getVariables() const | CFunction | |
| getVariableValue(const unsigned C_INT32 &index) const | CFunction | [virtual] |
| Gui enum value | CCopasiObject | [protected] |
| hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| hasCircularDependency() const | CEvaluationTree | |
| hasUpdateMethod() const | CCopasiObject | |
| initVariables() | CFunction | [protected] |
| isArray() const | CCopasiObject | |
| isBoolean() const | CEvaluationTree | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isReference() const | CCopasiObject | |
| isReversible() const | CFunction | |
| isRoot() const | CCopasiObject | |
| isSeparator() const | CCopasiObject | |
| isStaticString() const | CCopasiObject | |
| isSuitable(const unsigned C_INT32 noSubstrates, const unsigned C_INT32 noProducts, const TriLogic reversible) | CFunction | |
| isUsable() const | CEvaluationTree | |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH) | CFunction | [virtual] |
| MassAction enum value | CEvaluationTree | |
| Matrix enum value | CCopasiObject | [protected] |
| mBooleanRequired | CEvaluationTree | [protected] |
| mInfix | CEvaluationTree | [protected] |
| mObjects | CCopasiContainer | [protected] |
| ModelEntity enum value | CCopasiObject | [protected] |
| mpNodeList | CEvaluationTree | [protected] |
| mpRoot | CEvaluationTree | [protected] |
| mSBMLId | CEvaluationTree | |
| mType | CEvaluationTree | [protected] |
| mUsable | CEvaluationTree | [protected] |
| mValue | CEvaluationTree | [protected] |
| NameVector enum value | CCopasiObject | [protected] |
| NonUniqueName enum value | CCopasiObject | [protected] |
| objectMap typedef | CCopasiContainer | |
| operator<<(std::ostream &os, const CFunction &f) | CFunction | [friend] |
| CEvaluationTree::operator<<(std::ostream &os, const CCopasiObject &o) | CCopasiObject | [friend] |
| parse() | CEvaluationTree | [protected] |
| PreDefined enum value | CEvaluationTree | |
| print(std::ostream *ostream) const | CCopasiObject | [virtual] |
| Reference enum value | CCopasiObject | [protected] |
| remove(CCopasiObject *pObject) | CCopasiContainer | [virtual] |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| Root enum value | CCopasiObject | [protected] |
| Separator enum value | CCopasiObject | [protected] |
| setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies) | CCopasiObject | |
| setInfix(const std::string &infix) | CMassAction | [virtual] |
| setMiriamAnnotation(const std::string &miriamAnnotation, const std::string &newId, const std::string &oldId) | CAnnotation | |
| setNotes(const std::string ¬es) | CAnnotation | |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | [virtual] |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | [inline] |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | [inline, static] |
| setReversible(const TriLogic &reversible) | CFunction | |
| setRoot(CEvaluationNode *pRootNode) | CEvaluationTree | |
| setSBMLId(const std::string &id) | CEvaluationTree | |
| setTree(const ASTNode &pRootNode) | CEvaluationTree | |
| setType(const CEvaluationTree::Type &type) | CEvaluationTree | [protected] |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | [inline] |
| smpRenameHandler | CCopasiObject | [protected, static] |
| splitFunction(const CEvaluationNode *node, const std::string &name1, const std::string &name2) const | CFunction | |
| StaticString enum value | CCopasiObject | [protected] |
| toAST(const CCopasiDataModel *pDataModel) const | CEvaluationTree | [virtual] |
| Type enum name | CEvaluationTree | |
| TypeName | CEvaluationTree | [static] |
| updateTree() | CEvaluationTree | |
| UserDefined enum value | CEvaluationTree | |
| ValueBool enum value | CCopasiObject | [protected] |
| ValueDbl enum value | CCopasiObject | [protected] |
| ValueInt enum value | CCopasiObject | [protected] |
| ValueString enum value | CCopasiObject | [protected] |
| Vector enum value | CCopasiObject | [protected] |
| writeMathML(std::ostream &out, const std::vector< std::vector< std::string > > &env, bool expand=true, bool fullExpand=true, unsigned C_INT32 l=0) const | CMassAction | [virtual] |
| CFunction::writeMathML(std::ostream &out, unsigned C_INT32 l=0) const | CFunction | [virtual] |
| XMLType | CEvaluationTree | [static] |
| ~CAnnotation() | CAnnotation | |
| ~CCopasiContainer() | CCopasiContainer | [virtual] |
| ~CCopasiObject() | CCopasiObject | [virtual] |
| ~CEvaluationTree() | CEvaluationTree | [virtual] |
| ~CFunction() | CFunction | [virtual] |
| ~CMassAction() | CMassAction | |
1.7.5.1
