, including all inherited members.
| adaptiveSA enum value | CCopasiMethod | |
| add(CCopasiObject *pObject, const bool &adopt=true) | CCopasiContainer | [virtual] |
| addDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| addGroup(const std::string &name) | CCopasiParameterGroup | |
| addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| addParameter(const CCopasiParameter ¶meter) | CCopasiParameterGroup | |
| addParameter(const std::string &name, const CCopasiParameter::Type type) | CCopasiParameterGroup | |
| addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value) | CCopasiParameterGroup | [inline] |
| addParameter(CCopasiParameter *pParameter) | CCopasiParameterGroup | |
| addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0) | CCopasiContainer | [inline, protected] |
| allPositive() | CSteadyStateMethod | [protected] |
| Array enum value | CCopasiObject | [protected] |
| assertGroup(const std::string &name) | CCopasiParameterGroup | |
| assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue) | CCopasiParameterGroup | [inline] |
| beginIndex() const | CCopasiParameterGroup | |
| beginName() const | CCopasiParameterGroup | |
| BOOL enum value | CCopasiParameter | |
| buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) | CCopasiObject | [static] |
| calculateJacobianX(const C_FLOAT64 &oldMaxRate) | CSteadyStateMethod | [protected] |
| CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container) | CCopasiContainer | |
| CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL) | CCopasiContainer | |
| CCopasiMethod(const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL) | CCopasiMethod | [protected] |
| CCopasiMethod(const CCopasiMethod &src, const CCopasiContainer *pParent=NULL) | CCopasiMethod | |
| CCopasiObject() | CCopasiObject | [protected] |
| CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0) | CCopasiObject | [protected] |
| CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL) | CCopasiObject | |
| CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL) | CCopasiParameter | |
| CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter") | CCopasiParameter | |
| CCopasiParameterGroup() | CCopasiParameterGroup | [protected] |
| CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL) | CCopasiParameterGroup | |
| CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup") | CCopasiParameterGroup | |
| clear() | CCopasiParameterGroup | |
| clearDirectDependencies() | CCopasiObject | |
| clearRefresh() | CCopasiObject | |
| CN enum value | CCopasiParameter | |
| CNewtonMethod(const CNewtonMethod &src, const CCopasiContainer *pParent=NULL) | CNewtonMethod | |
| Container enum value | CCopasiObject | [protected] |
| createSteadyStateMethod(CCopasiMethod::SubType subType=CCopasiMethod::Newton) | CSteadyStateMethod | [static] |
| crossSectionMethod enum value | CCopasiMethod | |
| CSteadyStateMethod(CCopasiMethod::SubType subType, const CCopasiContainer *pParent=NULL) | CSteadyStateMethod | [protected] |
| CSteadyStateMethod(const CSteadyStateMethod &src, const CCopasiContainer *pParent=NULL) | CSteadyStateMethod | |
| CSteadyStateMethod::createSteadyStateMethod(CCopasiMethod::SubType subType) | CNewtonMethod | [friend] |
| DataModel enum value | CCopasiObject | [protected] |
| dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | |
| deterministic enum value | CCopasiMethod | |
| directMethod enum value | CCopasiMethod | |
| doJacobian(CMatrix< C_FLOAT64 > &jacobian, CMatrix< C_FLOAT64 > &jacobianX) | CSteadyStateMethod | |
| DOUBLE enum value | CCopasiParameter | |
| DsaLsodar enum value | CCopasiMethod | |
| EFMAlgorithm enum value | CCopasiMethod | |
| EFMBitPatternAlgorithm enum value | CCopasiMethod | |
| EFMBitPatternTreeAlgorithm enum value | CCopasiMethod | |
| elevateChildren() | CNewtonMethod | [virtual] |
| EmptyList | CCopasiContainer | [static] |
| endIndex() const | CCopasiParameterGroup | |
| endName() const | CCopasiParameterGroup | |
| EvolutionaryProgram enum value | CCopasiMethod | |
| EXPRESSION enum value | CCopasiParameter | |
| FILE enum value | CCopasiParameter | |
| Flag enum name | CCopasiObject | [protected] |
| foundEquilibrium enum value | CSteadyStateMethod | |
| foundNegative enum value | CSteadyStateMethod | |
| GeneticAlgorithm enum value | CCopasiMethod | |
| GeneticAlgorithmSR enum value | CCopasiMethod | |
| getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| getChildObjectUnits(const CCopasiObject *pObject) const | CCopasiContainer | [virtual] |
| getCN() const | CCopasiObject | [virtual] |
| getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const | CCopasiObject | [virtual] |
| getGroup(const std::string &name) | CCopasiParameterGroup | |
| getGroup(const std::string &name) const | CCopasiParameterGroup | |
| getGroup(const unsigned C_INT32 &index) | CCopasiParameterGroup | |
| getGroup(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| getIndex(const std::string &name) const | CCopasiParameterGroup | |
| getKey(const std::string &name) const | CCopasiParameterGroup | |
| getKey(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| CCopasiParameter::getKey() const | CCopasiParameter | [virtual] |
| getMethodLog() const | CSteadyStateMethod | |
| getName(const unsigned C_INT32 &index) const | CCopasiParameterGroup | [virtual] |
| getObject(const CCopasiObjectName &cn) const | CCopasiContainer | [virtual] |
| getObjectAncestor(const std::string &type) const | CCopasiObject | |
| getObjectDataModel() | CCopasiObject | |
| getObjectDataModel() const | CCopasiObject | |
| getObjectDisplayName(bool regular=true, bool richtext=false) const | CCopasiParameter | [virtual] |
| getObjectName() const | CCopasiObject | |
| getObjectParent() const | CCopasiObject | |
| getObjects() const | CCopasiContainer | [virtual] |
| getObjectType() const | CCopasiObject | |
| getParameter(const std::string &name) | CCopasiParameterGroup | |
| getParameter(const std::string &name) const | CCopasiParameterGroup | |
| getParameter(const unsigned C_INT32 &index) | CCopasiParameterGroup | |
| getParameter(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| getRefresh() const | CCopasiObject | |
| getStabilityResolution() | CSteadyStateMethod | |
| getSubType() const | CCopasiMethod | |
| getType() const | CCopasiMethod | |
| CCopasiParameterGroup::getType(const std::string &name) const | CCopasiParameterGroup | |
| CCopasiParameterGroup::getType(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| getUnits() const | CCopasiContainer | [virtual] |
| getUpdateMethod() const | CCopasiObject | |
| getValue(const std::string &name) const | CCopasiParameterGroup | |
| getValue(const unsigned C_INT32 &index) const | CCopasiParameterGroup | |
| getValue(const std::string &name) | CCopasiParameterGroup | |
| getValue(const unsigned C_INT32 &index) | CCopasiParameterGroup | |
| CCopasiParameter::getValue() const | CCopasiParameter | |
| CCopasiParameter::getValue() | CCopasiParameter | |
| getValueObject() const | CCopasiContainer | [virtual] |
| getValuePointer() const | CCopasiParameter | [virtual] |
| GROUP enum value | CCopasiParameter | |
| Gui enum value | CCopasiObject | [protected] |
| hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const | CCopasiObject | |
| hasUpdateMethod() const | CCopasiObject | |
| HookeJeeves enum value | CCopasiMethod | |
| Householder enum value | CCopasiMethod | |
| hybrid enum value | CCopasiMethod | |
| HybridGASA enum value | CCopasiMethod | |
| hybridLSODA enum value | CCopasiMethod | |
| index_iterator typedef | CCopasiParameterGroup | |
| initialize(const CSteadyStateProblem *pProblem) | CNewtonMethod | [virtual] |
| initObjects() | CCopasiContainer | [protected] |
| INT enum value | CCopasiParameter | |
| INVALID enum value | CCopasiParameter | |
| isArray() const | CCopasiObject | |
| isContainer() const | CCopasiObject | |
| isDataModel() const | CCopasiObject | |
| isEquilibrium(const C_FLOAT64 &resolution) const | CSteadyStateMethod | [protected] |
| isMatrix() const | CCopasiObject | |
| isNameVector() const | CCopasiObject | |
| isNonUniqueName() const | CCopasiObject | |
| isReference() const | CCopasiObject | |
| isRoot() const | CCopasiObject | |
| isSeparator() const | CCopasiObject | |
| isStaticString() const | CCopasiObject | |
| isSteadyState(C_FLOAT64 value) | CNewtonMethod | |
| isValidProblem(const CCopasiProblem *pProblem) | CNewtonMethod | [virtual] |
| isValidValue(const C_FLOAT64 &value) const | CCopasiParameter | |
| isValidValue(const C_INT32 &value) const | CCopasiParameter | |
| isValidValue(const unsigned C_INT32 &value) const | CCopasiParameter | |
| isValidValue(const bool &value) const | CCopasiParameter | |
| isValidValue(const std::string &value) const | CCopasiParameter | |
| isValidValue(const CCopasiObjectName &value) const | CCopasiParameter | |
| isValidValue(const std::vector< CCopasiParameter * > &value) const | CCopasiParameter | |
| isValueBool() const | CCopasiObject | |
| isValueDbl() const | CCopasiObject | |
| isValueInt() const | CCopasiObject | |
| isValueString() const | CCopasiObject | |
| isVector() const | CCopasiObject | |
| KEY enum value | CCopasiParameter | |
| LevenbergMarquardt enum value | CCopasiMethod | |
| load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH) | CNewtonMethod | [virtual] |
| LSODAR enum value | CCopasiMethod | |
| lyapWolf enum value | CCopasiMethod | |
| Matrix enum value | CCopasiObject | [protected] |
| mcaMethodReder enum value | CCopasiMethod | |
| mKey | CCopasiParameter | [protected] |
| mMethodLog | CSteadyStateMethod | [protected] |
| mObjects | CCopasiContainer | [protected] |
| ModelEntity enum value | CCopasiObject | [protected] |
| mpCallBack | CCopasiMethod | [protected] |
| mpDerivationFactor | CSteadyStateMethod | [protected] |
| mpDerivationResolution | CSteadyStateMethod | [protected] |
| mpJacobianX | CSteadyStateMethod | [protected] |
| mpModel | CSteadyStateMethod | [protected] |
| mpParentTask | CSteadyStateMethod | [protected] |
| mpProblem | CSteadyStateMethod | [protected] |
| mpProgressHandler | CSteadyStateMethod | [protected] |
| mpSSResolution | CSteadyStateMethod | [protected] |
| mpSteadyState | CSteadyStateMethod | [protected] |
| mSize | CCopasiParameter | [protected] |
| mValue | CCopasiParameter | [protected] |
| name_iterator typedef | CCopasiParameterGroup | |
| NameVector enum value | CCopasiObject | [protected] |
| NelderMead enum value | CCopasiMethod | |
| Newton enum value | CCopasiMethod | |
| NonUniqueName enum value | CCopasiObject | [protected] |
| objectMap typedef | CCopasiContainer | |
| operator<<(std::ostream &os, const CCopasiMethod &o) | CCopasiMethod | [friend] |
| CCopasiParameterGroup::operator<<(std::ostream &os, const CCopasiParameterGroup &o) | CCopasiParameterGroup | [friend] |
| CCopasiParameter::operator<<(std::ostream &os, const CCopasiParameter &o) | CCopasiParameter | [friend] |
| CCopasiContainer::operator<<(std::ostream &os, const CCopasiObject &o) | CCopasiObject | [friend] |
| operator=(const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | |
| CCopasiParameter::operator=(const CCopasiParameter &rhs) | CCopasiParameter | |
| operator==(const CCopasiParameterGroup &lhs, const CCopasiParameterGroup &rhs) | CCopasiParameterGroup | [friend] |
| CCopasiParameter::operator==(const CCopasiParameter &lhs, const CCopasiParameter &rhs) | CCopasiParameter | [friend] |
| parameterGroup typedef | CCopasiParameterGroup | |
| ParticleSwarm enum value | CCopasiMethod | |
| Praxis enum value | CCopasiMethod | |
| print(std::ostream *ostream) const | CCopasiMethod | [virtual] |
| printResult(std::ostream *ostream) const | CCopasiMethod | [virtual] |
| process(CState *pState, CMatrix< C_FLOAT64 > &jacobianX, CProcessReport *handler) | CSteadyStateMethod | |
| processInternal() | CNewtonMethod | [virtual] |
| RandomSearch enum value | CCopasiMethod | |
| RandomSearchMaster enum value | CCopasiMethod | |
| Reference enum value | CCopasiObject | [protected] |
| remove(CCopasiObject *pObject) | CCopasiContainer | [virtual] |
| removeDirectDependency(const CCopasiObject *pObject) | CCopasiObject | |
| removeParameter(const std::string &name) | CCopasiParameterGroup | |
| removeParameter(const unsigned C_INT32 &index) | CCopasiParameterGroup | |
| ReturnCode enum name | CSteadyStateMethod | |
| returnProcess(bool steadyStateFound) | CSteadyStateMethod | [protected, virtual] |
| Root enum value | CCopasiObject | [protected] |
| scanMethod enum value | CCopasiMethod | |
| sensMethod enum value | CCopasiMethod | |
| Separator enum value | CCopasiObject | [protected] |
| setCallBack(CProcessReport *pCallBack) | CCopasiMethod | [virtual] |
| setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies) | CCopasiObject | |
| setObjectName(const std::string &name) | CCopasiObject | |
| setObjectParent(const CCopasiContainer *pParent) | CCopasiObject | [virtual] |
| setObjectValue(const C_FLOAT64 &value) | CCopasiObject | |
| setObjectValue(const C_INT32 &value) | CCopasiObject | |
| setObjectValue(const bool &value) | CCopasiObject | |
| setRefresh(CType *pType, void(CType::*method)(void)) | CCopasiObject | [inline] |
| setRenameHandler(CRenameHandler *rh) | CCopasiObject | [inline, static] |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &)) | CCopasiObject | [inline] |
| setUpdateMethod(CType *pType, void(CType::*method)(const bool &)) | CCopasiObject | [inline] |
| setValue(const std::string &name, const CType &value) | CCopasiParameterGroup | [inline] |
| setValue(const unsigned C_INT32 &index, const CType &value) | CCopasiParameterGroup | [inline] |
| CCopasiParameter::setValue(const CType &value) | CCopasiParameter | [inline] |
| CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value) | CCopasiParameter | |
| SimulatedAnnealing enum value | CCopasiMethod | |
| size() const | CCopasiParameterGroup | |
| smpRenameHandler | CCopasiObject | [protected, static] |
| SRES enum value | CCopasiMethod | |
| StaticString enum value | CCopasiObject | [protected] |
| Statistics enum value | CCopasiMethod | |
| SteepestDescent enum value | CCopasiMethod | |
| stochastic enum value | CCopasiMethod | |
| STRING enum value | CCopasiParameter | |
| SubType enum name | CCopasiMethod | |
| SubTypeName | CCopasiMethod | [static] |
| swap(const unsigned C_INT32 &iFrom, const unsigned C_INT32 &iTo) | CCopasiParameterGroup | |
| swap(index_iterator &from, index_iterator &to) | CCopasiParameterGroup | |
| targetFunction(const CVector< C_FLOAT64 > &particleFluxes) | CNewtonMethod | |
| tauLeap enum value | CCopasiMethod | |
| TruncatedNewton enum value | CCopasiMethod | |
| tssCSP enum value | CCopasiMethod | |
| tssILDM enum value | CCopasiMethod | |
| tssILDMModified enum value | CCopasiMethod | |
| Type enum name | CCopasiParameter | |
| TypeName | CCopasiParameter | [static] |
| UDOUBLE enum value | CCopasiParameter | |
| UINT enum value | CCopasiParameter | |
| unset enum value | CCopasiMethod | |
| ValueBool enum value | CCopasiObject | [protected] |
| ValueDbl enum value | CCopasiObject | [protected] |
| ValueInt enum value | CCopasiObject | [protected] |
| ValueString enum value | CCopasiObject | [protected] |
| Vector enum value | CCopasiObject | [protected] |
| XMLSubType | CCopasiMethod | [static] |
| XMLType | CCopasiParameter | [static] |
| ~CCopasiContainer() | CCopasiContainer | [virtual] |
| ~CCopasiMethod() | CCopasiMethod | [virtual] |
| ~CCopasiObject() | CCopasiObject | [virtual] |
| ~CCopasiParameter() | CCopasiParameter | [virtual] |
| ~CCopasiParameterGroup() | CCopasiParameterGroup | [virtual] |
| ~CNewtonMethod() | CNewtonMethod | |
| ~CSteadyStateMethod() | CSteadyStateMethod | |
1.7.5.1
