CODEExporterBM Class Reference

#include <CODEExporterBM.h>

Inheritance diagram for CODEExporterBM:

List of all members.

Public Member Functions
	CODEExporterBM ()
virtual bool	exportTitleData (const CCopasiDataModel *pDataModel, std::ofstream &outFile)
virtual void	setReservedNames ()
virtual std::string	translateTimeVariableName ()
std::string	setODEName (const std::string &objName)
std::string	setConcentrationName (const std::string &objName)
virtual std::string	translateObjectName (const std::string &realName)
std::string	testName (const std::string &name)
virtual bool	exportSingleObject (std::ostringstream &which, std::string &name, std::string &expression, std::string &comments)
virtual bool	exportSingleMetabolite (const CMetab *metab, std::string &expression, std::string &comments)
virtual bool	exportSingleCompartment (const CCompartment *comp, std::string &expression, std::string &comments)
virtual bool	exportSingleModVal (const CModelValue *modval, std::string &expression, std::string &comments)
virtual bool	exportSingleModelEntity (const CModelEntity *tmp, std::string &expression, std::string &comments)
virtual bool	exportSingleParameter (const CCopasiParameter *param, std::string &expression, std::string &comments)
virtual bool	exportSingleODE (const CModelEntity *mentity, std::string &equation, std::string &comments)
bool	exportSingleFunction (const CFunction *func, std::set< std::string > &isExported)
virtual std::string	KineticFunction2ODEmember (const CReaction *reac)
virtual std::string	getDisplayFunctionString (CFunction *func)
virtual std::string	getDisplayExpressionString (CExpression *tmp)
virtual std::string	exportTitleString (const unsigned C_INT32 tmp)
Public Attributes
std::map< std::string, unsigned C_INT32 >	Frequancy
std::set< std::string >	NameSet

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Constructor & Destructor Documentation

CODEExporterBM::CODEExporterBM

(

)

Constructor for the exporter.

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Member Function Documentation

bool CODEExporterBM::exportSingleCompartment	(	const CCompartment *	comp,
		std::string &	expression,
		std::string &	comments
	)		[virtual]

Reimplemented from CODEExporter.

bool CODEExporterBM::exportSingleFunction	(	const CFunction *	func,
		std::set< std::string > &	isExported
	)

bool CODEExporterBM::exportSingleMetabolite	(	const CMetab *	metab,
		std::string &	expression,
		std::string &	comments
	)		[virtual]

Reimplemented from CODEExporter.

bool CODEExporterBM::exportSingleModelEntity	(	const CModelEntity *	tmp,
		std::string &	expression,
		std::string &	comments
	)		[virtual]

Reimplemented from CODEExporter.

bool CODEExporterBM::exportSingleModVal	(	const CModelValue *	modval,
		std::string &	expression,
		std::string &	comments
	)		[virtual]

Reimplemented from CODEExporter.

bool CODEExporterBM::exportSingleObject	(	std::ostringstream &	which,
		std::string &	name,
		std::string &	expression,
		std::string &	comments
	)		[virtual]

Reimplemented from CODEExporter.

bool CODEExporterBM::exportSingleODE	(	const CModelEntity *	mentity,
		std::string &	equation,
		std::string &	comments
	)		[virtual]

Reimplemented from CODEExporter.

bool CODEExporterBM::exportSingleParameter	(	const CCopasiParameter *	param,
		std::string &	expression,
		std::string &	comments
	)		[virtual]

Reimplemented from CODEExporter.

bool CODEExporterBM::exportTitleData	(	const CCopasiDataModel *	pDataModel,
		std::ofstream &	outFile
	)		[virtual]

std::string CODEExporterBM::exportTitleString

(

const unsigned C_INT32

tmp

)

[virtual]

Reimplemented from CODEExporter.

std::string CODEExporterBM::getDisplayExpressionString

(

CExpression *

tmp

)

[virtual]

Reimplemented from CODEExporter.

std::string CODEExporterBM::getDisplayFunctionString

(

CFunction *

func

)

[virtual]

Reimplemented from CODEExporter.

std::string CODEExporterBM::KineticFunction2ODEmember

(

const CReaction *

reac

)

[virtual]

Reimplemented from CODEExporter.

std::string CODEExporterBM::setConcentrationName

(

const std::string &

objName

)

[virtual]

Reimplemented from CODEExporter.

std::string CODEExporterBM::setODEName

(

const std::string &

objName

)

[virtual]

Reimplemented from CODEExporter.

void CODEExporterBM::setReservedNames

(

)

[virtual]

Reimplemented from CODEExporter.

std::string CODEExporterBM::testName

(

const std::string &

name

)

This method tests whether the given Berkeley Madonna name already assigned, put the new name (in cappital letters: all names can be upper or lower case) in the set of assigned names or modify the name

std::string CODEExporterBM::translateObjectName

(

const std::string &

realName

)

[virtual]

This method adapt a Copasi name for Berkeley Madonna syntax: Names can not start with a number. Any other combination of letters and numbers is valid as is the underscore.

Reimplemented from CODEExporter.

std::string CODEExporterBM::translateTimeVariableName

(

)

[virtual]

Reimplemented from CODEExporter.

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Member Data Documentation

std::map< std::string, unsigned C_INT32 > CODEExporterBM::Frequancy

std::set<std::string> CODEExporterBM::NameSet

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The documentation for this class was generated from the following files:

• copasi/tss/CODEExporterBM.h
• copasi/tss/CODEExporterBM.cpp