#include <CLsodaMethod.h>

Inheritance diagram for CLsodaMethod:

Classes
struct	Data
Public Member Functions
	CLsodaMethod (const CLsodaMethod &src, const CCopasiContainer *pParent=NULL)
	~CLsodaMethod ()
virtual bool	elevateChildren ()
virtual void	stateChanged ()
virtual Status	step (const double &deltaT)
virtual void	start (const CState *initialState)
virtual void	evalF (const C_FLOAT64 t, const C_FLOAT64 y, C_FLOAT64 *ydot)
virtual void	evalR (const C_FLOAT64 t, const C_FLOAT64 y, const C_INT nr, C_FLOAT64 r)
Static Public Member Functions
static void	EvalF (const C_INT n, const C_FLOAT64 t, const C_FLOAT64 y, C_FLOAT64 ydot)
static void	EvalR (const C_INT n, const C_FLOAT64 t, const C_FLOAT64 y, const C_INT nr, C_FLOAT64 *r)
Protected Types
enum	RootMasking { NONE = 0, ALL, DISCRETE }
Protected Member Functions
	CLsodaMethod (const CCopasiMethod::SubType &subType=deterministic, const CCopasiContainer *pParent=NULL)
void	destroyRootMask ()
Protected Attributes
bool *	mpReducedModel
CState	mMethodState
C_INT	mLsodaStatus
CModel *	mpModel
bool	mNoODE
RootMasking	mRootMasking
Friends
CTrajectoryMethod *	CTrajectoryMethod::createTrajectoryMethod (CCopasiMethod::SubType subType, CTrajectoryProblem *pProblem)

Member Enumeration Documentation

enum CLsodaMethod::RootMasking [protected]

Enumerator:

NONE
ALL
DISCRETE

Constructor & Destructor Documentation

CLsodaMethod::CLsodaMethod	(	const CCopasiMethod::SubType &	subType = `deterministic`,
		const CCopasiContainer *	pParent = `NULL`
	)		`[protected]`

Default constructor.

Parameters:

const	CCopasiMethod::SubType & subType (default: deterministic)
const	CCopasiContainer * pParent (default: NULL)

CLsodaMethod::CLsodaMethod	(	const CLsodaMethod &	src,
		const CCopasiContainer *	pParent = `NULL`
	)

Copy constructor.

Parameters:

const CLsodaMethod &	src
const	CCopasiContainer * pParent (default: NULL)

CLsodaMethod::~CLsodaMethod ( )

Destructor.

Member Function Documentation

void CLsodaMethod::destroyRootMask ( ) [protected]

Destroy the mask which hides all roots being constant and zero.

bool CLsodaMethod::elevateChildren ( ) [virtual]

This methods must be called to elevate subgroups to derived objects. The default implementation does nothing.

Returns:: bool success

Reimplemented from CCopasiParameterGroup.

Reimplemented in CTrajectoryMethodDsaLsodar.

void CLsodaMethod::EvalF	(	const C_INT *	n,
		const C_FLOAT64 *	t,
		const C_FLOAT64 *	y,
		C_FLOAT64 *	ydot
	)		`[static]`

void CLsodaMethod::evalF	(	const C_FLOAT64 *	t,
		const C_FLOAT64 *	y,
		C_FLOAT64 *	ydot
	)		`[virtual]`

This evaluates the derivatives

Reimplemented in CTrajectoryMethodDsaLsodar.

void CLsodaMethod::EvalR	(	const C_INT *	n,
		const C_FLOAT64 *	t,
		const C_FLOAT64 *	y,
		const C_INT *	nr,
		C_FLOAT64 *	r
	)		`[static]`

void CLsodaMethod::evalR	(	const C_FLOAT64 *	t,
		const C_FLOAT64 *	y,
		const C_INT *	nr,
		C_FLOAT64 *	r
	)		`[virtual]`

This evaluates the roots

Reimplemented in CTrajectoryMethodDsaLsodar.

void CLsodaMethod::start ( const CState * initialState ) [virtual]

This instructs the method to prepare for integration starting with the initialState given.

Parameters:

const CState * initialState

Reimplemented from CTrajectoryMethod.

Reimplemented in CTrajectoryMethodDsaLsodar.

void CLsodaMethod::stateChanged ( ) [virtual]

Inform the trajectory method that the state has changed outside its control

Reimplemented from CTrajectoryMethod.

Reimplemented in CTrajectoryMethodDsaLsodar.

CTrajectoryMethod::Status CLsodaMethod::step ( const double & deltaT ) [virtual]

This instructs the method to calculate a time step of deltaT starting with the current state, i.e., the result of the previous step. The new state (after deltaT) is expected in the current state. The return value is the actual time step taken.

Parameters:

const double & deltaT