CILDMMethod Member List

This is the complete list of members for CILDMMethod, including all inherited members.

adaptiveSA enum value	CCopasiMethod
add(CCopasiObject *pObject, const bool &adopt=true)	CCopasiContainer	[virtual]
addDirectDependency(const CCopasiObject *pObject)	CCopasiObject
addGroup(const std::string &name)	CCopasiParameterGroup
addMatrixReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)	CCopasiContainer	[inline, protected]
addObjectReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)	CCopasiContainer	[inline, protected]
addParameter(const CCopasiParameter &parameter)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type)	CCopasiParameterGroup
addParameter(const std::string &name, const CCopasiParameter::Type type, const CType &value)	CCopasiParameterGroup	[inline]
addParameter(CCopasiParameter *pParameter)	CCopasiParameterGroup
addVectorReference(const std::string &name, CType &reference, const unsigned C_INT32 &flag=0)	CCopasiContainer	[inline, protected]
Array enum value	CCopasiObject	[protected]
assertGroup(const std::string &name)	CCopasiParameterGroup
assertParameter(const std::string &name, const CCopasiParameter::Type type, const CType &defaultValue)	CCopasiParameterGroup	[inline]
beginIndex() const	CCopasiParameterGroup
beginName() const	CCopasiParameterGroup
BOOL enum value	CCopasiParameter
buildUpdateSequence(const std::set< const CCopasiObject * > &objects, const std::set< const CCopasiObject * > &uptoDateObjects, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >())	CCopasiObject	[static]
calculateDerivativesX(C_FLOAT64 *X1, C_FLOAT64 *Y1)	CTSSAMethod	[protected]
CCopasiContainer(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=CCopasiObject::Container)	CCopasiContainer
CCopasiContainer(const CCopasiContainer &src, const CCopasiContainer *pParent=NULL)	CCopasiContainer
CCopasiMethod(const CCopasiTask::Type &taskType, const SubType &subType, const CCopasiContainer *pParent=NULL)	CCopasiMethod	[protected]
CCopasiMethod(const CCopasiMethod &src, const CCopasiContainer *pParent=NULL)	CCopasiMethod
CCopasiObject()	CCopasiObject	[protected]
CCopasiObject(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &type="CN", const unsigned C_INT32 &flag=0)	CCopasiObject	[protected]
CCopasiObject(const CCopasiObject &src, const CCopasiContainer *pParent=NULL)	CCopasiObject
CCopasiParameter(const CCopasiParameter &src, const CCopasiContainer *pParent=NULL)	CCopasiParameter
CCopasiParameter(const std::string &name, const Type &type, const void *pValue=NULL, const CCopasiContainer *pParent=NULL, const std::string &objectType="Parameter")	CCopasiParameter
CCopasiParameterGroup()	CCopasiParameterGroup	[protected]
CCopasiParameterGroup(const CCopasiParameterGroup &src, const CCopasiContainer *pParent=NULL)	CCopasiParameterGroup
CCopasiParameterGroup(const std::string &name, const CCopasiContainer *pParent=NULL, const std::string &objectType="ParameterGroup")	CCopasiParameterGroup
CILDMMethod(const CILDMMethod &src, const CCopasiContainer *pParent=NULL)	CILDMMethod
clear()	CCopasiParameterGroup
clearDirectDependencies()	CCopasiObject
clearRefresh()	CCopasiObject
CN enum value	CCopasiParameter
Container enum value	CCopasiObject	[protected]
createAnnotationsM()	CILDMMethod
createTSSAMethod(CCopasiMethod::SubType subType=CCopasiMethod::unset, CTSSAProblem *pProblem=NULL)	CTSSAMethod	[static]
crossSectionMethod enum value	CCopasiMethod
CTSSAMethod(const CCopasiMethod::SubType &subType, const CCopasiContainer *pParent=NULL)	CTSSAMethod	[protected]
CTSSAMethod(const CTSSAMethod &src, const CCopasiContainer *pParent=NULL)	CTSSAMethod
CTSSAMethod::createTSSAMethod(CCopasiMethod::SubType subType, CTSSAProblem *pProblem)	CILDMMethod	[friend]
DataModel enum value	CCopasiObject	[protected]
dependsOn(std::set< const CCopasiObject * > candidates, const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const	CCopasiObject
deterministic enum value	CCopasiMethod
deuflhard(C_INT &slow, C_INT &info)	CILDMMethod
directMethod enum value	CCopasiMethod
DOUBLE enum value	CCopasiParameter
DsaLsodar enum value	CCopasiMethod
EFMAlgorithm enum value	CCopasiMethod
EFMBitPatternAlgorithm enum value	CCopasiMethod
EFMBitPatternTreeAlgorithm enum value	CCopasiMethod
elevateChildren()	CTSSAMethod	[protected, virtual]
EmptyList	CCopasiContainer	[static]
emptyVectors()	CILDMMethod
endIndex() const	CCopasiParameterGroup
endName() const	CCopasiParameterGroup
EvalF(const C_INT *n, const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)	CTSSAMethod	[protected, static]
evalF(const C_FLOAT64 *t, const C_FLOAT64 *y, C_FLOAT64 *ydot)	CTSSAMethod	[protected]
EvolutionaryProgram enum value	CCopasiMethod
EXPRESSION enum value	CCopasiParameter
FILE enum value	CCopasiParameter
Flag enum name	CCopasiObject	[protected]
GeneticAlgorithm enum value	CCopasiMethod
GeneticAlgorithmSR enum value	CCopasiMethod
getAllDependencies(std::set< const CCopasiObject * > &dependencies, const std::set< const CCopasiObject * > &context) const	CCopasiObject
getChildObjectUnits(const CCopasiObject *pObject) const	CCopasiContainer	[virtual]
getCN() const	CCopasiObject	[virtual]
getDirectDependencies(const std::set< const CCopasiObject * > &context=std::set< const CCopasiObject * >()) const	CCopasiObject	[virtual]
getGroup(const std::string &name)	CCopasiParameterGroup
getGroup(const std::string &name) const	CCopasiParameterGroup
getGroup(const unsigned C_INT32 &index)	CCopasiParameterGroup
getGroup(const unsigned C_INT32 &index) const	CCopasiParameterGroup
getIndex(const std::string &name) const	CCopasiParameterGroup
getKey(const std::string &name) const	CCopasiParameterGroup
getKey(const unsigned C_INT32 &index) const	CCopasiParameterGroup
CCopasiParameter::getKey() const	CCopasiParameter	[virtual]
getName(const unsigned C_INT32 &index) const	CCopasiParameterGroup	[virtual]
getObject(const CCopasiObjectName &cn) const	CCopasiContainer	[virtual]
getObjectAncestor(const std::string &type) const	CCopasiObject
getObjectDataModel()	CCopasiObject
getObjectDataModel() const	CCopasiObject
getObjectDisplayName(bool regular=true, bool richtext=false) const	CCopasiParameter	[virtual]
getObjectName() const	CCopasiObject
getObjectParent() const	CCopasiObject
getObjects() const	CCopasiContainer	[virtual]
getObjectType() const	CCopasiObject
getParameter(const std::string &name)	CCopasiParameterGroup
getParameter(const std::string &name) const	CCopasiParameterGroup
getParameter(const unsigned C_INT32 &index)	CCopasiParameterGroup
getParameter(const unsigned C_INT32 &index) const	CCopasiParameterGroup
getReacSlowSpacePrintAnn() const	CILDMMethod	[inline]
getRefresh() const	CCopasiObject
getSubType() const	CCopasiMethod
getTable(std::string name)	CTSSAMethod	[inline]
getTableName() const	CTSSAMethod	[inline]
getTMP1PrintAnn() const	CILDMMethod	[inline]
getTMP2PrintAnn() const	CILDMMethod	[inline]
getTMP3PrintAnn() const	CILDMMethod	[inline]
getType() const	CCopasiMethod
CCopasiParameterGroup::getType(const std::string &name) const	CCopasiParameterGroup
CCopasiParameterGroup::getType(const unsigned C_INT32 &index) const	CCopasiParameterGroup
getUnits() const	CCopasiContainer	[virtual]
getUpdateMethod() const	CCopasiObject
getValue(const std::string &name) const	CCopasiParameterGroup
getValue(const unsigned C_INT32 &index) const	CCopasiParameterGroup
getValue(const std::string &name)	CCopasiParameterGroup
getValue(const unsigned C_INT32 &index)	CCopasiParameterGroup
CCopasiParameter::getValue() const	CCopasiParameter
CCopasiParameter::getValue()	CCopasiParameter
getValueObject() const	CCopasiContainer	[virtual]
getValuePointer() const	CCopasiParameter	[virtual]
getVec_TimeScale(int step)	CTSSAMethod
getVfastSpacePrintAnn() const	CILDMMethod	[inline]
getVslowMetabPrintAnn() const	CILDMMethod	[inline]
getVslowPrintAnn() const	CILDMMethod	[inline]
getVslowSpacePrintAnn() const	CILDMMethod	[inline]
GROUP enum value	CCopasiParameter
Gui enum value	CCopasiObject	[protected]
hasCircularDependencies(std::set< const CCopasiObject * > &candidates, std::set< const CCopasiObject * > &verified, const std::set< const CCopasiObject * > &context) const	CCopasiObject
hasUpdateMethod() const	CCopasiObject
HookeJeeves enum value	CCopasiMethod
Householder enum value	CCopasiMethod
hybrid enum value	CCopasiMethod
HybridGASA enum value	CCopasiMethod
hybridLSODA enum value	CCopasiMethod
index_iterator typedef	CCopasiParameterGroup
initializeAtol()	CTSSAMethod	[protected]
initializeIntegrationsParameter()	CTSSAMethod	[protected]
initializeParameter()	CILDMMethod	[virtual]
initObjects()	CCopasiContainer	[protected]
INT enum value	CCopasiParameter
integrationMethodStart(const CState *initialState)	CTSSAMethod	[protected]
integrationStep(const double &deltaT)	CTSSAMethod	[protected]
INVALID enum value	CCopasiParameter
isArray() const	CCopasiObject
isContainer() const	CCopasiObject
isDataModel() const	CCopasiObject
isMatrix() const	CCopasiObject
isNameVector() const	CCopasiObject
isNonUniqueName() const	CCopasiObject
isReference() const	CCopasiObject
isRoot() const	CCopasiObject
isSeparator() const	CCopasiObject
isStaticString() const	CCopasiObject
isValidProblem(const CCopasiProblem *pProblem)	CTSSAMethod	[virtual]
isValidValue(const C_FLOAT64 &value) const	CCopasiParameter
isValidValue(const C_INT32 &value) const	CCopasiParameter
isValidValue(const unsigned C_INT32 &value) const	CCopasiParameter
isValidValue(const bool &value) const	CCopasiParameter
isValidValue(const std::string &value) const	CCopasiParameter
isValidValue(const CCopasiObjectName &value) const	CCopasiParameter
isValidValue(const std::vector< CCopasiParameter * > &value) const	CCopasiParameter
isValueBool() const	CCopasiObject
isValueDbl() const	CCopasiObject
isValueInt() const	CCopasiObject
isValueString() const	CCopasiObject
isVector() const	CCopasiObject
KEY enum value	CCopasiParameter
LevenbergMarquardt enum value	CCopasiMethod
load(CReadConfig &configBuffer, CReadConfig::Mode mode=CReadConfig::SEARCH)	CCopasiMethod	[virtual]
LSODAR enum value	CCopasiMethod
lyapWolf enum value	CCopasiMethod
map_index(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim)	CTSSAMethod	[protected]
map_index_desc(C_FLOAT64 *eval_r, C_INT *index, const C_INT &dim)	CTSSAMethod	[protected]
mapTableToName	CTSSAMethod
mat_anal_fast_space(C_INT &slow)	CTSSAMethod	[protected]
mat_anal_fast_space_thomas(C_INT &slow)	CTSSAMethod	[protected]
mat_anal_metab(C_INT &slow)	CTSSAMethod	[protected]
mat_anal_mod(C_INT &slow)	CTSSAMethod	[protected]
mat_anal_mod_space(C_INT &slow)	CTSSAMethod	[protected]
mAtol	CTSSAMethod	[protected]
Matrix enum value	CCopasiObject	[protected]
mcaMethodReder enum value	CCopasiMethod
mCfast	CTSSAMethod	[protected]
mCurrentStep	CTSSAMethod
mCurrentTime	CTSSAMethod
mData	CTSSAMethod	[protected]
mDtol	CTSSAMethod	[protected]
mDWork	CTSSAMethod	[protected]
mEPS	CTSSAMethod	[protected]
mErrorMsg	CTSSAMethod	[protected]
mIWork	CTSSAMethod	[protected]
mJacobian	CTSSAMethod	[protected]
mJacobian_initial	CTSSAMethod	[protected]
mJType	CTSSAMethod	[protected]
mKey	CCopasiParameter	[protected]
mLSODA	CTSSAMethod	[protected]
mLsodaStatus	CTSSAMethod	[protected]
mObjects	CCopasiContainer	[protected]
ModelEntity enum value	CCopasiObject	[protected]
mpCallBack	CCopasiMethod	[protected]
mpCurrentState	CTSSAMethod	[protected]
mpModel	CTSSAMethod	[protected]
mpProblem	CTSSAMethod	[protected]
mpState	CTSSAMethod	[protected]
mQ	CTSSAMethod	[protected]
mQ_desc	CTSSAMethod	[protected]
mQz	CTSSAMethod	[protected]
mR	CTSSAMethod	[protected]
mR_desc	CTSSAMethod	[protected]
mReacSlowSpace	CILDMMethod
mReacSlowSpacePrint	CILDMMethod
mReducedModel	CTSSAMethod	[protected]
mRtol	CTSSAMethod	[protected]
mSize	CCopasiParameter	[protected]
mSlow	CTSSAMethod	[protected]
mState	CTSSAMethod	[protected]
mTd	CTSSAMethod	[protected]
mTd_save	CTSSAMethod	[protected]
mTdInverse	CTSSAMethod	[protected]
mTdInverse_save	CTSSAMethod	[protected]
mTime	CTSSAMethod	[protected]
mTMP1	CILDMMethod
mTMP1Print	CILDMMethod
mTMP2	CILDMMethod
mTMP2Print	CILDMMethod
mTMP3	CILDMMethod
mTMP3Print	CILDMMethod
mValue	CCopasiParameter	[protected]
mVec_mReacSlowSpace	CILDMMethod
mVec_mTMP1	CILDMMethod
mVec_mTMP2	CILDMMethod
mVec_mTMP3	CILDMMethod
mVec_mVfastSpace	CILDMMethod
mVec_mVslow	CILDMMethod
mVec_mVslowMetab	CILDMMethod
mVec_mVslowSpace	CILDMMethod
mVec_SlowModes	CTSSAMethod
mVec_TimeScale	CTSSAMethod
mVfast_space	CTSSAMethod	[protected]
mVfastSpacePrint	CILDMMethod
mVslow	CTSSAMethod	[protected]
mVslow_metab	CTSSAMethod	[protected]
mVslow_space	CTSSAMethod	[protected]
mVslowMetabPrint	CILDMMethod
mVslowPrint	CILDMMethod
mVslowSpacePrint	CILDMMethod
mY	CTSSAMethod	[protected]
mY_cons	CTSSAMethod	[protected]
mY_initial	CTSSAMethod	[protected]
mYdot	CTSSAMethod	[protected]
name_iterator typedef	CCopasiParameterGroup
NameVector enum value	CCopasiObject	[protected]
NelderMead enum value	CCopasiMethod
newton(C_FLOAT64 *ys, C_INT &slow, C_INT &info)	CILDMMethod
Newton enum value	CCopasiMethod
NonUniqueName enum value	CCopasiObject	[protected]
objectMap typedef	CCopasiContainer
operator<<(std::ostream &os, const CCopasiMethod &o)	CCopasiMethod	[friend]
CCopasiParameterGroup::operator<<(std::ostream &os, const CCopasiParameterGroup &o)	CCopasiParameterGroup	[friend]
CCopasiParameter::operator<<(std::ostream &os, const CCopasiParameter &o)	CCopasiParameter	[friend]
CCopasiContainer::operator<<(std::ostream &os, const CCopasiObject &o)	CCopasiObject	[friend]
operator=(const CCopasiParameterGroup &rhs)	CCopasiParameterGroup
CCopasiParameter::operator=(const CCopasiParameter &rhs)	CCopasiParameter
operator==(const CCopasiParameterGroup &lhs, const CCopasiParameterGroup &rhs)	CCopasiParameterGroup	[friend]
CCopasiParameter::operator==(const CCopasiParameter &lhs, const CCopasiParameter &rhs)	CCopasiParameter	[friend]
orthog(C_INT &number1, C_INT &number2)	CTSSAMethod	[protected]
parameterGroup typedef	CCopasiParameterGroup
ParticleSwarm enum value	CCopasiMethod
Praxis enum value	CCopasiMethod
pReacSlowSpacePrintAnn	CILDMMethod
print(std::ostream *ostream) const	CCopasiMethod	[virtual]
printResult(std::ostream *ostream) const	CILDMMethod	[virtual]
pTmp1	CILDMMethod
pTMP1	CILDMMethod
pTMP1PrintAnn	CILDMMethod
pTmp2	CILDMMethod
pTMP2	CILDMMethod
pTMP2PrintAnn	CILDMMethod
pTmp3	CILDMMethod
pTMP3	CILDMMethod
pTMP3PrintAnn	CILDMMethod
pTmp4	CILDMMethod
pTmp5	CILDMMethod
pVfastSpacePrintAnn	CILDMMethod
pVslowMetabPrintAnn	CILDMMethod
pVslowPrintAnn	CILDMMethod
pVslowSpacePrintAnn	CILDMMethod
RandomSearch enum value	CCopasiMethod
RandomSearchMaster enum value	CCopasiMethod
Reference enum value	CCopasiObject	[protected]
remove(CCopasiObject *pObject)	CCopasiContainer	[virtual]
removeDirectDependency(const CCopasiObject *pObject)	CCopasiObject
removeParameter(const std::string &name)	CCopasiParameterGroup
removeParameter(const unsigned C_INT32 &index)	CCopasiParameterGroup
returnCurrentTime(int step)	CTSSAMethod	[inline]
Root enum value	CCopasiObject	[protected]
scanMethod enum value	CCopasiMethod
schur(C_INT &info)	CTSSAMethod	[protected]
schur_desc(C_INT &info)	CTSSAMethod	[protected]
sensMethod enum value	CCopasiMethod
Separator enum value	CCopasiObject	[protected]
setAnnotationM(int step)	CILDMMethod	[virtual]
setCallBack(CProcessReport *pCallBack)	CCopasiMethod	[virtual]
setCurrentState(CState *currentState)	CTSSAMethod
setDirectDependencies(const std::set< const CCopasiObject * > &directDependencies)	CCopasiObject
setObjectName(const std::string &name)	CCopasiObject
setObjectParent(const CCopasiContainer *pParent)	CCopasiObject	[virtual]
setObjectValue(const C_FLOAT64 &value)	CCopasiObject
setObjectValue(const C_INT32 &value)	CCopasiObject
setObjectValue(const bool &value)	CCopasiObject
setProblem(CTSSAProblem *problem)	CTSSAMethod
setRefresh(CType *pType, void(CType::*method)(void))	CCopasiObject	[inline]
setRenameHandler(CRenameHandler *rh)	CCopasiObject	[inline, static]
setUpdateMethod(CType *pType, void(CType::*method)(const C_FLOAT64 &))	CCopasiObject	[inline]
setUpdateMethod(CType *pType, void(CType::*method)(const C_INT32 &))	CCopasiObject	[inline]
setUpdateMethod(CType *pType, void(CType::*method)(const bool &))	CCopasiObject	[inline]
setValue(const std::string &name, const CType &value)	CCopasiParameterGroup	[inline]
setValue(const unsigned C_INT32 &index, const CType &value)	CCopasiParameterGroup	[inline]
CCopasiParameter::setValue(const CType &value)	CCopasiParameter	[inline]
CCopasiParameter::setValue(const std::vector< CCopasiParameter * > &value)	CCopasiParameter
setVectors(int slowMode)	CILDMMethod
SimulatedAnnealing enum value	CCopasiMethod
size() const	CCopasiParameterGroup
smpRenameHandler	CCopasiObject	[protected, static]
SRES enum value	CCopasiMethod
start(const CState *initialState)	CILDMMethod	[virtual]
StaticString enum value	CCopasiObject	[protected]
Statistics enum value	CCopasiMethod
SteepestDescent enum value	CCopasiMethod
step(const double &deltaT)	CILDMMethod	[virtual]
stochastic enum value	CCopasiMethod
STRING enum value	CCopasiParameter
SubType enum name	CCopasiMethod
SubTypeName	CCopasiMethod	[static]
swap(const unsigned C_INT32 &iFrom, const unsigned C_INT32 &iTo)	CCopasiParameterGroup
swap(index_iterator &from, index_iterator &to)	CCopasiParameterGroup
sylvester(C_INT slow, C_INT &info)	CTSSAMethod	[protected]
tableNames	CTSSAMethod
tauLeap enum value	CCopasiMethod
transformation_norm(C_INT &slow, C_INT &info)	CILDMMethod
TruncatedNewton enum value	CCopasiMethod
tssCSP enum value	CCopasiMethod
tssILDM enum value	CCopasiMethod
tssILDMModified enum value	CCopasiMethod
Type enum name	CCopasiParameter
TypeName	CCopasiParameter	[static]
UDOUBLE enum value	CCopasiParameter
UINT enum value	CCopasiParameter
unset enum value	CCopasiMethod
update_nid(C_INT *index, C_INT *nid, const C_INT &dim)	CTSSAMethod	[protected]
update_pid(C_INT *index, C_INT *pid, const C_INT &dim)	CTSSAMethod	[protected]
ValueBool enum value	CCopasiObject	[protected]
ValueDbl enum value	CCopasiObject	[protected]
ValueInt enum value	CCopasiObject	[protected]
ValueString enum value	CCopasiObject	[protected]
Vector enum value	CCopasiObject	[protected]
XMLSubType	CCopasiMethod	[static]
XMLType	CCopasiParameter	[static]
~CCopasiContainer()	CCopasiContainer	[virtual]
~CCopasiMethod()	CCopasiMethod	[virtual]
~CCopasiObject()	CCopasiObject	[virtual]
~CCopasiParameter()	CCopasiParameter	[virtual]
~CCopasiParameterGroup()	CCopasiParameterGroup	[virtual]
~CILDMMethod()	CILDMMethod
~CTSSAMethod()	CTSSAMethod