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• reactionInvolvesCompartment() : CModelExpansion , CModelAdd
• ReactionResult() : CModelAnalyzer::ReactionResult
• ReactionsWidget1() : ReactionsWidget1
• read() : CExperiment
• readColumnNames() : CExperiment
• readListOfLayouts() : SBMLDocumentLoader
• readSBML() : SBMLImporter
• reallocated() : C2DCurveData , CHistoCurveData
• reallocatedData() : C2DPlotCurve
• recursion_limit_exception() : recursion_limit_exception
• reDimensionalize() : CArrayAnnotation
• refresh() : COutputHandler
• Refresh() : Refresh
• refresh() : CExpression , CCopasiTimer
• refreshCompartments() : CQSpeciesWidget
• refreshConcentration() : CMetab
• refreshConcentrationRate() : CMetab
• refreshDependentNumber() : CMoiety
• refreshInitialConcentration() : CMetab
• refreshInitialValue() : CMetab , CModelEntity , CMoiety
• refreshInitialValues() : DataModelGUI
• refreshNumber() : CMetab
• refreshRate() : CMetab
• RefreshTemplate() : RefreshTemplate< CClass >
• refreshText() : CQReportListItem
• refreshTransitionTime() : CMetab
• refreshValue() : CMoiety
• registerListView() : DataModelGUI
• remove() : CNormalLcm , CNormalProduct , CFunctionParameters , CStateTemplate , CCopasiContainer , CKeyFactory , CCopasiVector< CType > , CCopasiVectorN< CType > , CDirEntry , CSparseMatrix
• removeBiologicalDescription() : CMIRIAMInfo
• removeCallParameter() : CFunctionParameterMap
• removeChild() : CEvaluationNodeCall , ConverterASTNode , IndexedNode , CCopasiNode< _Data >
• removeChildren() : IndexedNode
• removeColumn() : CStepMatrix
• removeCompartment() : CModel
• removeCOPASIkey() : SBMLReference
• removeCreator() : CMIRIAMInfo
• removeCurve() : PlotSubwidget
• removeDatamodel() : CCopasiRootContainer
• removeDependentModelObjects() : CModel
• removeDeterministicReaction() : CHybridMethod , CHybridMethodLSODA
• removeDirectDependency() : CCopasiObject
• removeDuplicate() : ObjectBrowserWidget
• removeEdge() : CRDFNode
• removeEmptySubTree() : CCopasiSimpleSelectionTree
• removeEvent() : CModel
• removeExperiment() : CExperimentSet , CFitItem
• removeFiles() : CDirEntry
• removeFunction() : CFunctionDB
• removeInitialAssignment() : CSBMLExporter
• removeInterface() : COutputHandlerPlot , COutputHandler
• removeInvalidColumns() : CStepMatrix
• removeItemInAnimation() : CQLayoutMainWindow
• removeLayout() : CCopasiDataModel
• removeLine() : CTableauMatrix
• removeLocalReactionParameter() : CModel
• removeMapping() : CReactionInterface
• removeMetabolite() : CModel
• removeModelValue() : CModel
• removeModification() : CMIRIAMInfo
• removeNode() : CCopasiTree< _Node >
• removeOptItem() : COptProblem
• removeParameter() : CCopasiParameterGroup
• removePlotSpec() : COutputDefinitionVector
• removeProgressItem() : CQProgressDialog
• removeReaction() : CModel
• removeReference() : CMIRIAMInfo
• removeReportDefinition() : CReportDefinitionVector
• removeRow() : CQBaseDataModel , DataModelGUI
• removeRows() : CQPlotDM , CQReactionDM , CQReportDM , CQSpecieDM , CQBiologicalDescriptionDM , CQCreatorDM , CQModifiedDM , CQReferenceDM , CQBaseDataModel , CQCompartmentDM , CQEFMNetReactionDM , CQEFMReactionDM , CQEFMSpeciesDM , CQEventDM , CQFluxModeDM , CQFunctionDM , CQGlobalQuantityDM
• removeRule() : CSBMLExporter
• removeSBMLid() : SBMLReference
• removeSBMLIdFromFunctions() : CCopasiDataModel
• removeSlider() : SliderDialog
• removeStochReaction() : CIndexedPriorityQueue
• removeTriplet() : CRDFGraph
• removeTripletFromGraph() : CRDFNode
• removeUnusedFunctions() : SBMLImporter
• removeUnusedObjects() : CSBMLExporter
• removeVariables() : CSensProblem
• renameMassActionParameters() : SBMLImporter
• reorder() : CStateTemplate
• replace_delay_nodes() : SBMLImporter
• replace_local_parameters() : CSBMLExporter
• replace_name_nodes() : SBMLImporter
• replace_time_with_initial_time() : SBMLImporter
• replaceAmountReferences() : SBMLImporter
• replaceBvars() : SBMLImporter
• replaceCallNodeNames() : SBMLImporter
• replaceChild() : CSBMLExporter
• replaceL1IncompatibleNodes() : CSBMLExporter
• replaceLog() : SBMLImporter , CEvaluationNode
• replaceLogicOperators() : CMathMLToTeX
• replaceMathOperators() : CMathMLToTeX
• replaceObjectNames() : SBMLImporter
• replaceOtherOperators() : CMathMLToTeX
• replacePowerFunctionNodes() : SBMLImporter
• replaceRoot() : CEvaluationNode , SBMLImporter
• replaceSpeciesReferences() : CSBMLExporter
• replaceTimeDependentFunctionCalls() : SBMLImporter
• replaceTimeNodeNames() : SBMLImporter
• replaceTimeNodesInFunctionDefinition() : SBMLImporter
• replaceTrigoOperators() : CMathMLToTeX
• replot() : CopasiPlot
• replotSignal() : CopasiPlot
• reportBtnClicked() : TaskWidget
• rescale() : ScrollZoomer
• rescaleDataSets() : CQGLNetworkPainter
• rescaleDataSetsWithNewMinMax() : CQGLNetworkPainter
• rescaleNode() : CQGLNetworkPainter
• reset() : CQProgressItemBar , BarColor , CScanItem , CQProgressItem , CQProgressItemText , CProcessReport , CXMLElementHandler< CType, CCommon >
• resetConstraintViolation() : CFitConstraint
• resetItem() : CProgressBar , CProcessReport
• resetKeySpace() : ObjectBrowserItem
• resetPlot() : PlotSubwidget
• resetRange() : CSlider
• resetValue() : CopasiSlider , SliderDialog , CSlider
• resetView() : CQGLNetworkPainter , CQGLViewport
• resize() : CTableRow , CSparseMatrix , CStateTemplate , CMatrix< CType > , CCopasiArray , CCallParameters< Type > , CArrayAnnotation , CState , CDependencyGraph , CVector< CType > , CCopasiVector< CType >
• resizeAllMatrices() : CMCAMethod
• resizeCoordSys() : Plot3d
• resizeData() : CTimeSeriesTable
• resizeEvent() : CScanContainerWidget , CQGLViewport
• resizeGL() : CQGLNetworkPainter
• resizeOneDimension() : CArrayAnnotation
• resizeTable() : CopasiTableWidget
• restore() : CMCATask , CTrajectoryTask , CSteadyStateTask , CLyapTask , COptProblem , CFitTask , CTSSATask , CCopasiProblem , CCopasiTask , CFitProblem
• restore_local_parameters() : CSBMLExporter
• restoreCurrentItem() : ListViews
• restoreFunctionDB() : SBMLImporter
• restoreModelIndependentData() : CExperiment
• restoreTrajectoryProblem() : CFitProblem
• restoreValue() : CScanItem
• Result() : CFunctionAnalyzer::Result
• resultAvailable() : CLyapTask
• resultHasDivergence() : CLyapTask
• retranslateUi() : Ui_FunctionItemWidget , Ui_CQProgressItemBar , Ui_CQTextDialog , Ui_CQProgressItemText
• returnCurrentTime() : CTSSAMethod
• returnProcess() : CSteadyStateMethod
• revalidate() : CQValidator< Type >
• reverse() : CChemEqInterface , CReactionInterface
• reverseChecked() : ObjectBrowserItem
• revertBtnClicked() : TaskWidget
• revertPressed() : ParametersWidget
• rewind() : CReadConfig
• rightPrecedence() : CNodeK
• round() : SBMLImporter
• row() : CSparseMatrixElement , IndexedNode
• rowCount() : CQReferenceDM , CQModifiedDM , CQEventDM , CQReactionDM , CQEFMReactionDM , DataModelGUI , CQCompartmentDM , CQEFMSpeciesDM , CQFluxModeDM , CQGlobalQuantityDM , CQSpecieDM , CQPlotDM , CQCreatorDM , CQReportDM , CQBiologicalDescriptionDM , CQFunctionDM , CQEFMNetReactionDM
• RowScale() : RowScale
• run() : CQTaskThread
• runAnimation() : CQGLNetworkPainter
• runBtnClicked() : TaskWidget
• rungeKutta() : CHybridMethod
• runMCATask() : SliderDialog
• runScanTask() : SliderDialog
• runSteadyStateTask() : SliderDialog
• runTask() : CQOptimizationWidget , CQLyapWidget , CQFittingWidget , ScanWidget , TaskWidget , SteadyStateWidget , CQTSSAWidget , CQTrajectoryWidget , CQMoietiesTaskWidget , CQEFMWidget , SliderDialog , CQMCAWidget , SensitivitiesWidget
• runTimeCourse() : SliderDialog